RnoEX0064248 @ rn6
Exon Skipping
Gene
ENSRNOG00000019560 | Pde2a
Description
phosphodiesterase 2A [Source:RGD Symbol;Acc:620965]
Coordinates
chr1:166534643-166595531:+
Coord C1 exon
chr1:166534643-166534904
Coord A exon
chr1:166564814-166564880
Coord C2 exon
chr1:166595442-166595531
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCTGTTGTCCAATTCCTCAGGCG
3' ss Score
6.2
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCAGGCGGAGCAGCCCAGGAGGCAGCAGAGCTGGATCGGGTGTTGAGTACAGCCAGAGTCAAGAACAGCCATAGCTCTTGGTTCCTATGCCTGCTGGGAGTGCCCCAGCCAGAACTCCGAGCAGTGGGAGCAAGGGGGGACAGGGCGAGGTGCCACCTTAGTCTGGCCGGGGAGGCAGATGATGAGGAGTGATGGGGCAGGCATGCGGCCACTCCATCCTCTGCAGGAGCCAGCAGTACCCGGCAGCGCGACCGGCTGAGCC
Seq A exon
GCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAACCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG
Seq C2 exon
GATGCTTTGCTGAGCCTGGGCGCCGTTATCGACATCGCGGGCCTTCGACAGGCTGCCAAGGATGCCCTCTCGGCCGTGCTCCCCAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019560-'2-7,'2-3,11-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.916 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACTCCGAGCAGTGGGA
R:
CCCAGGCTCAGCAAAGCATC
Band lengths:
173-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]