RnoEX0064356 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56558432-56561130:+
Coord C1 exon
chr18:56558432-56558584
Coord A exon
chr18:56559741-56559830
Coord C2 exon
chr18:56560990-56561130
Length
90 bp
Sequences
Splice sites
3' ss Seq
CATGCCGTTTGAATTTGCAGATT
3' ss Score
9.37
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GATGAGCATTTCTGCGACTTCGTGGACAGCCTCACAGAATATCAGACCAAGAGCATCCTGGCATCCCCCATCATGAATGGGAAGGACGTGGTAGCCATAATTATGGCTGTGAATAAAATAGATGAACCCCACTTCACCAAGAGAGATGAAGAG
Seq A exon
ATTCTTCTCAAATACCTCAACTTTGTGAATCTGATCATGAAGGTATTCCACCTGAGTTACCTGCACAACTGTGAGACCCGGCGTGGCCAG
Seq C2 exon
ATATTGCTGTGGTCTGGAAGCAAGGTCTTCGAAGAGCTCACGGATATAGAGAGGCAGTTCCACAAGGCCCTGTATACGGTCCGAGCTTTTCTCAACTGTGACAGATACTCTGTAGGACTCTTAGACATGACCAAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.3=100)
A:
PF0159021=GAF=PD(8.0=40.0)
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCGACTTCGTGGACAG
R:
CGAAGACCTTGCTTCCAGACC
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]