GgaEX6050539 @ galGal4
Exon Skipping
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53328819-53331604:-
Coord C1 exon
chrZ:53331452-53331604
Coord A exon
chrZ:53331012-53331101
Coord C2 exon
chrZ:53328819-53328959
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCATTGTTTTTCTTTACAGCTT
3' ss Score
10.84
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGTCCCCAGTTCAGTTCATTTGTTGATGAGCTCACCGACTACACTACAAAAAGCATCCTTGCAACACCCATCTTGAATGGCAAAGATCTAGTTGCTGTCATTTTGGCTATTAATAAGCTGAACGGCCCATTCTTCACCAACTCTGATGAAACA
Seq A exon
CTTTTCCTGAAGTACCTGAATTTTGCTTCCTTAAACCTGAAAATTTATCACTTGAGTTATCTTCACAACTGTGAGACTCGAAGAGGCCAG
Seq C2 exon
GTGCTGCTGTGGTCAGCTAACAAGGTCTTTGAGGAACTGACAGATATTGAGAGGCAATTCCACAAGGCCTTCTACACTGTGAGAGCATATCTGAATTGTGACAGGTACTCAGTAGGCCTCCTGGACATGACAAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.3=100)
A:
PF0159021=GAF=PD(8.0=40.0)
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGCCCATTCTTCACCAA
R:
CTTTGTCATGTCCAGGAGGCC
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]