BtaEX6032576 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108820838-108838486:+
Coord C1 exon
chr6:108820838-108820990
Coord A exon
chr6:108821229-108821318
Coord C2 exon
chr6:108838346-108838486
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGCCACAACCTCTGTTTCAGGTT
3' ss Score
8.6
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
TGCCCCCACTTCAGCTCCTTCGCGGATGAGCTGACCGACTATGTGACGAGGAACATCCTGGCCACACCCATCATGAACGGCAAAGATGTCGTGGCTGTGATCATGGCTGTGAACAAGCTGGATGGCCCATGTTTCACAAGTGAAGATGAAGAC
Seq A exon
GTTTTCCTGAAATACCTGAACTTCGGGACATTAAACCTGAAGATCTACCACTTGAGCTACCTGCACAACTGCGAGACTCGCCGTGGCCAG
Seq C2 exon
GTGCTGCTGTGGTCGGCCAACAAGGTGTTTGAGGAGCTGACAGACATCGAGAGGCAGTTTCACAAGGCCTTCTACACTGTACGGGCCTATCTGAACTGTGACCGGTACTCGGTGGGCCTCCTGGACATGACCAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(35.0=100)
A:
PF0159021=GAF=PD(3.5=16.7)
C2:
PF0159021=GAF=PU(18.1=68.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACCGACTATGTGACGA
R:
ACTGCCTCTCGATGTCTGTCA
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]