RnoEX0064381 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2343152-2357284:-
Coord C1 exon
chr14:2357132-2357284
Coord A exon
chr14:2356520-2356609
Coord C2 exon
chr14:2343152-2343252
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTATTAATTGTTGTTTCAGGTT
3' ss Score
7.98
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
TGTCCTCACTTCAGCCCATTTGCCGATGAGCTCACCGACTACGTGACAAAGAACATTCTGTCCACGCCAATCATGAATGGCAAAGATGTTGTGGCTGTGATTATGGCAGTGAATAAATTGGATGGTCCATGCTTCACGAGCGAAGACGAAGAT
Seq A exon
GTTTTCACGAAGTACCTGAATTTTGCTACATTAAACCTGAAGATCTATCACCTAAGCTACCTCCACAACTGTGAAACACGCAGAGGCCAG
Seq C2 exon
GGTCTCAGATCTTGTTTCCCCAACTGGGTGAGGAATGATGGCATTCACAGAAGGGCATAATTGCTGAAAGAACCAGACCACAGAGGAAAGGTGTAGAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'2-2,'2-1,3-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.3=100)
A:
PF0159021=GAF=PD(8.0=40.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAAGATGTTGTGGCTGT
R:
ACCTTTCCTCTGTGGTCTGGT
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]