MmuEX6019423 @ mm10
Exon Skipping
Gene
ENSMUSG00000029491 | Pde6b
Description
phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide [Source:MGI Symbol;Acc:MGI:97525]
Coordinates
chr5:108403320-108419610:+
Coord C1 exon
chr5:108403320-108403472
Coord A exon
chr5:108404078-108404167
Coord C2 exon
chr5:108419470-108419610
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCTTATAATTGCTGTTTCAGGTT
3' ss Score
9.92
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
TGTCCCCACTTCAGCTCATTCGCCGATGAGCTCACCGACTATGTGACAAAGAACATTTTGTCCACACCAATCATGAATGGCAAAGATGTCGTGGCTGTGATCATGGCAGTGAATAAACTGGATGGCCCATGCTTCACGAGTGAAGATGAAGAT
Seq A exon
GTTTTCACGAAGTACCTGAATTTTGCTACATTAAACCTGAAGATCTATCACCTAAGCTACCTCCACAACTGTGAGACACGCAGAGGCCAG
Seq C2 exon
GTGCTCCTCTGGTCAGCCAATAAGGTGTTTGAAGAGCTGACAGACATCGAAAGACAGTTCCACAAGGCCTTCTATACTGTCCGGGCCTATCTAAACTGCGAACGGTATTCAGTGGGCCTCCTGGACATGACCAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029491-'9-6,'9-2,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.3=100)
A:
PF0159021=GAF=PD(8.0=40.0)
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGATCATGGCAGTGAA
R:
GAGGCCCACTGAATACCGTTC
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types