DreEX0054318 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24731868-24732579:-
Coord C1 exon
chr14:24732427-24732579
Coord A exon
chr14:24732104-24732193
Coord C2 exon
chr14:24731868-24732008
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCAATGTTCTGTCTTGTAGACA
3' ss Score
9.53
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GACAGCCATTTCAGTGACTTTGTGGACAACTTGACAGAGTACGAGACCAAGAATGTGCTTGCGACCCCTATCATGAATGGCAAGGACATGGTGGCTGTCATGATGGCAGTCAACAAGATCGGGGCTCCTCATTTCACTGCTCAGGATGAAGAG
Seq A exon
ACACTGAAGAAATATCTCAACTTTGCTAATCTTGTGCTCCGAGTGTTTCACCTGAGCTACCTGCACAACTGTGAAACCAGAAGAGGACAA
Seq C2 exon
GTATTGCTCTGGTCTGCCAGCAAAGTGTTTGAAGAGCTGACTGACATTGAGAGACAGTTCCACAAGGCTCTTTATACAGTCCGAGCTTTTCTCAACTGTGACCGCTACTCTGTTGGCCTTCTCGACATGACCAAAACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.3=100)
A:
PF0159021=GAF=PD(8.0=40.0)
C2:
PF0159021=GAF=PU(18.0=68.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAACAAGATCGGGGCTC
R:
GAGAAGGCCAACAGAGTAGCG
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]