RnoEX0064362 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56559741-56565168:+
Coord C1 exon
chr18:56559741-56559830
Coord A exon
chr18:56560990-56561130
Coord C2 exon
chr18:56565094-56565168
Length
141 bp
Sequences
Splice sites
3' ss Seq
ACTTTTACAAATGTCTTCAGATA
3' ss Score
6.92
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTCTTCTCAAATACCTCAACTTTGTGAATCTGATCATGAAGGTATTCCACCTGAGTTACCTGCACAACTGTGAGACCCGGCGTGGCCAG
Seq A exon
ATATTGCTGTGGTCTGGAAGCAAGGTCTTCGAAGAGCTCACGGATATAGAGAGGCAGTTCCACAAGGCCCTGTATACGGTCCGAGCTTTTCTCAACTGTGACAGATACTCTGTAGGACTCTTAGACATGACCAAACAGAAG
Seq C2 exon
GAATTTTTTGATGTGTGGCCAGTTCTGATGGGCGAGGCCCCAGCCTACTCTGGTCCCAGGACTCCAGATGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(8.0=40.0)
A:
PF0159021=GAF=PU(18.0=68.1)
C2:
PF0159021=GAF=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTCAAATACCTCAACTTTGTGA
R:
CTTCCATCTGGAGTCCTGGGA
Band lengths:
162-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]