BtaEX6041228 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63247520-63255222:-
Coord C1 exon
chr7:63255133-63255222
Coord A exon
chr7:63254447-63254587
Coord C2 exon
chr7:63247520-63247594
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTGTATTTCTTCAGATA
3' ss Score
10.68
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATTCTTCTCAAGTACCTCAATTTTGCAAATCTAATCATGAAGGTGTTCCACCTGAGTTACCTGCACAACTGTGAGACTCGGCGTGGCCAG
Seq A exon
ATACTGTTGTGGTCTGGGAGCAAAGTCTTTGAAGAGCTTACAGACATTGAGAGGCAGTTCCACAAAGCCCTGTACACAGTCCGCGCCTTCCTCAACTGTGACAGATACTCTGTGGGGCTCTTAGACATGACCAAACAGAAG
Seq C2 exon
GAATTTTTTGATGTGTGGCCAGTCCTGATGGGGGAGGCTCCACCCTACGCTGGTCCCAGGACTCCGGATGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(8.0=40.0)
A:
PF0159021=GAF=PU(18.0=68.1)
C2:
PF0159021=GAF=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTCAAGTACCTCAATTTTGCA
R:
CTTCCATCCGGAGTCCTGGG
Band lengths:
162-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]