HsaEX6100566 @ hg38
Exon Skipping
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149921635-149944793:-
Coord C1 exon
chr5:149944200-149944793
Coord A exon
chr5:149931028-149931168
Coord C2 exon
chr5:149921635-149921709
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTTGTGTTTTTTCAGATA
3' ss Score
12.01
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CAGAGTAGCCAGTGGGATTCCCAGCCATGGGCGAGGTGACAGCAGAGGAGGTGGAGAAGTTCCTGGACTCGAATATTGGCTTTGCCAAACAGTACTACAACCTCCACTACCGGGCCAAGCTCATCTCCGACCTCCTTGGGGCCAAGGAGGCTGCCGTGGACTTCAGCAACTACCACTCCCCGAGCAGCATGGAGGAGAGCGAAATCATCTTTGATCTCCTGCGGGACTTTCAGGAGAATTTACAGACAGAGAAATGCATCTTCAATGTCATGAAGAAGCTGTGCTTCCTCCTGCAGGCAGACCGCATGAGCCTGTTCATGTACCGGACCCGCAATGGCATCGCAGAGCTGGCCACCAGGCTTTTCAATGTCCACAAGGATGCTGTCCTCGAGGACTGCCTGGTGATGCCCGACCAAGAGATCGTCTTCCCTTTGGACATGGGCATCGTGGGCCATGTCGCACACTCTAAGAAGATTGCTAACGTCCCCAACACAGAGGAG
Seq A exon
ATACTGCTGTGGTCTGGGAGCAAAGTCTTTGAAGAACTTACGGACATCGAACGACAGTTCCACAAAGCCCTGTACACAGTCCGTGCTTTCCTCAACTGTGACAGATACTCTGTGGGTCTCTTAGACATGACCAAGCAGAAG
Seq C2 exon
GAATTTTTTGATGTGTGGCCGGTTCTGATGGGTGAAGTTCCACCTTACTCTGGTCCCAGGACTCCGGATGGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(56.7=53.8)
A:
PF0159021=GAF=PD(6.5=12.8),PF0159021=GAF=PU(18.0=68.1)
C2:
PF0159021=GAF=FE(13.5=100)
Main Skipping Isoform:
ENST00000255266fB22230
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCTGTTCATGTACCGGA
R:
GTCCTGGGACCAGAGTAAGGT
Band lengths:
256-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains