MmuEX6001900 @ mm10
Exon Skipping
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61232832-61238483:+
Coord C1 exon
chr18:61232832-61232921
Coord A exon
chr18:61234639-61234779
Coord C2 exon
chr18:61238409-61238483
Length
141 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTCTTCTGTCTTCAGATA
3' ss Score
12.13
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTCTTCTCAAGTACCTCAACTTTGTGAACCTGATCATGAAGGTATTCCACCTGAGCTACCTGCACAACTGTGAGACTCGTCGCGGCCAG
Seq A exon
ATATTGCTGTGGTCTGGGAGCAAGGTCTTTGAGGAGCTCACGGATATAGAGAGGCAGTTCCACAAGGCCCTGTACACGGTCCGGGCTTTCCTCAACTGTGACAGATACTCCGTAGGACTCTTAGACATGACCAAACAGAAG
Seq C2 exon
GAATTTTTTGATGTGTGGCCAGTTCTGATGGGCGAGGCTCCAGCTTACTCTGGTCCCAGGACTCCAGACGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(7.3=40.0)
A:
PF0159021=GAF=PU(18.0=68.1)
C2:
PF0159021=GAF=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTCTCAAGTACCTCAACTTTGT
R:
TCCGTCTGGAGTCCTGGGA
Band lengths:
162-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types