RnoEX0065194 @ rn6
Exon Skipping
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:107021757-107025957:+
Coord C1 exon
chr10:107021757-107021905
Coord A exon
chr10:107023343-107023495
Coord C2 exon
chr10:107025832-107025957
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATGGAAGATGTTTTTGTCAGACC
3' ss Score
-1.04
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCCTCTGGCTGTACCTGGCAGGGAGTAGCCTGCCCTGCCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGGGACCTGGAGGCCCAGATTGCCATCGTAACAGAGAGCCGAGCCCTGCAGCAGCAGCTTCACCAG
Seq A exon
ACCCTGAGCCCTTTCAAGCAAGCCTAAGACCTGCAAGCTTCCTGGTCTGTCCAGCGATCATGGCTCCCTGTGACCTGAGACAGATGCACAGCACTGTGGCCTCCACCACTGACGACTCCCTCCATCCCTGCCTCAGCATCTGTGAGGATACAA
Seq C2 exon
GAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTTTCCTCTGCGACCTTTGAGCAGCCAGGTCGGCAGGTCAAGCTGTGGGTGAAGATGGTGACCCCGCTGATCAAGAACTTCTTTTGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(28.8=100)
A:
PF130911=PLDc_2=PD(1.8=33.3)
C2:
PF130911=PLDc_2=PD(2.9=12.5)
Main Inclusion Isoform:
ENSRNOT00000004007fB10576
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACCTGGCAGGGAGTAGC
R:
GTTCTTGATCAGCGGGGTCAC
Band lengths:
252-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]