RnoEX0065193 @ rn6
Exon Skipping
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:107012746-107025957:+
Coord C1 exon
chr10:107012746-107013008
Coord A exon
chr10:107021757-107021905
Coord C2 exon
chr10:107025832-107025957
Length
149 bp
Sequences
Splice sites
3' ss Seq
CACATTTCCTTTTCCTGCAGGCC
3' ss Score
11.14
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTGACCGGGCTGCGTACTGCAGAGCAGCTAACAAACGGGTCATGGACGTTATTCACTCAGCCAGGACCCGACAGCAGATGCTGCATGCACAGACCTTTCACAGTGACTCCCTGCTGAGCCAGGAAGAGGCTGCAGCTGCTGGTGATCGCAGACCAGCACCGGACACCTGGATTTACCCACTGATCCAGATGAAGCCCTTTGAGATTCAGATAGATGAGATAGTCACTGAGACCCTGCTGACGGAAGCTGAGCGGGGAGCTAAG
Seq A exon
GCCTCTGGCTGTACCTGGCAGGGAGTAGCCTGCCCTGCCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGGGACCTGGAGGCCCAGATTGCCATCGTAACAGAGAGCCGAGCCCTGCAGCAGCAGCTTCACCAG
Seq C2 exon
GAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTTTCCTCTGCGACCTTTGAGCAGCCAGGTCGGCAGGTCAAGCTGTGGGTGAAGATGGTGACCCCGCTGATCAAGAACTTCTTTTGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(67.1=65.1)
A:
PF130911=PLDc_2=FE(28.8=100)
C2:
PF130911=PLDc_2=PD(2.9=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACAGTGACTCCCTGCTGA
R:
CTTCACCCACAGCTTGACCTG
Band lengths:
254-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]