RnoALTA0028851-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:107012746-107021905:+
Coord C1 exon
chr10:107012746-107013267
Coord A exon
NA
Coord C2 exon
chr10:107021830-107021905
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCTCCTAATTTTGGGTACAGGTC
3' ss Score
7.22
Exon sequences
Seq C1 exon
AGCAGCTAACAAACGGGTCATGGACGTTATTCACTCAGCCAGGACCCGACAGCAGATGCTGCATGCACAGACCTTTCACAGTGACTCCCTGCTGAGCCAGGAAGAGGCTGCAGCTGCTGGTGATCGCAGACCAGCACCGGACACCTGGATTTACCCACTGATCCAGATGAAGCCCTTTGAGATTCAGATAGATGAGATAGTCACTGAGACCCTGCTGACGGAAGCTGAGCGGGGAGCTAAGGTCTTCCTCACCACTGGCTACTTCAACCTGACACAGGCCTACATGGACCTGGTGCTAGGCACTCGAGCCGAGTATCAGATCCTTCTAGCCTCACCAGAGGTGAACGGCTTCTTTGGGGCTAAGGGTGTGGCCGGCGCCATCCCAGCTGCCTATGTGCACATTGAGCGACAGTTCTACAGTGAAGTGTGCAGCCTGGGGCAACAGGATCGGGTCCAGCTCCAGGAATACTGGCGCAGGGGCTGGACCTTTCATGCCAAAG
Seq A exon
NA
Seq C2 exon
GTCAGTTCACCGGGACCTGGAGGCCCAGATTGCCATCGTAACAGAGAGCCGAGCCCTGCAGCAGCAGCTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949-20-12,20-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(67.1=65.1)
A:
NA
C2:
PF130911=PLDc_2=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGCCTATGTGCACATT
R:
GCTCGGCTCTCTGTTACGATG
Band lengths:
172-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]