BtaALTA0021869-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000675 | PGS1
Description
Bos taurus phosphatidylglycerophosphate synthase 1 (PGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046395]
Coordinates
chr19:54413996-54422964:-
Coord C1 exon
chr19:54422443-54422964
Coord A exon
NA
Coord C2 exon
chr19:54413996-54414071
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TCTCCTAATTTTGGGTACAGGTC
3' ss Score
7.22
Exon sequences
Seq C1 exon
GGCAGCCAATAAGAGGGTCATGGACGTGATCAACTCCGCCAGGATGCGCCAGCAGATGCTGCACGCCCAGACCTTCCACAGCGACCCCCTCCTGACCCAGGAGGACGCCGCAGCTGCTGGAGACCGGAGGCCGGCCCCCGACACCTGGATCTACCCCCTGATCCAGATGAAGCCCTTTGAGATTCAGATCGATGAGATTGTCACCGAGACCCTGCTGACAGAGGCCGAGCGAGGGGCTAAGGTCTATCTCACCACTGGCTACTTCAACCTGACCCAGGCCTACATGGACCTGGTCTTGGGCACGCGGGCCGAGTACCAGATCCTGCTGGCCTCGCCGGAGGTGAACGGCTTCTTCGGGGCCAAGGGGGTGGCGGGCGCCATCCCGGCCGCCTACGTGCACATCGAGCGGCAGTTCTACAGTGAGGTGTGCAGCCTGGGGCAGCAGGAGCGGGTGCAGCTGCAGGAATACTGGCGCAGGGACTGGACGTTCCACGCCAAAG
Seq A exon
NA
Seq C2 exon
GTCGGTTCACCGGGACCTGGAGGCCCAGATCGCTATCGTCACGGAGAGCCGAGCCCTGCAGCAGCAGCTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000675-22-14,22-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(67.1=65.1)
A:
NA
C2:
PF130911=PLDc_2=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGGCTTCTTCGGGG
R:
CTCCAGGTCCCGGTGAACC
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development