MmuALTA0013122-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000017715 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:MGI Symbol;Acc:MGI:1921701]
Coordinates
chr11:118005370-118014722:+
Coord C1 exon
chr11:118005370-118005891
Coord A exon
NA
Coord C2 exon
chr11:118014647-118014722
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCTCCTAATTTTGGGTACAGGTC
3' ss Score
7.22
Exon sequences
Seq C1 exon
AGCAGCGAACAAGCGGGTCATGGACGTCATCCACTCGGCCAGGGCCCGGCAGCAGATGCTGCACGCACAGACCTTTCACAGTGATTCTCTGCTGAGCCAGGAAGAGGCTGCAGCTGCCGGGGACCGGAGGCCAGCGCCCGACACCTGGATTTACCCACTGATCCAGATGAAGCCCTTTGAGATTCAGATTGATGAGATAGTCACGGAGACGCTGCTGACGGAGGCTGAGCGCGGAGCTAAGGTCTTCCTCACCACTGGCTACTTCAACCTGACCCAGGCCTACATGGACCTGGTGCTAGGCACTCGAGCTGAGTATCAGATCCTTCTAGCCTCACCGGAGGTGAATGGCTTCTTTGGGGCTAAGGGCGTGGCGGGCGCCATCCCAGCCGCCTATGTGCACATTGAGCGACAGTTCTACAGTGAGGTGTGTAGCCTGGGGCAGCAGGATCGGGTCCAGCTCCAGGAATACTGGCGCAGGGGTTGGACCTTTCATGCCAAAG
Seq A exon
NA
Seq C2 exon
GTCAGTTCACCGGGACCTGGAAGCCCAGATTGCCATCGTGACGGAGAGCCGGTCCCTGCAGCAGCAGCTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017715-27-24,27-23,27-22-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(67.1=65.1)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATGGCTTCTTTGGGGCT
R:
CTTCCAGGTCCCGGTGAACT
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types