GgaEX0010266 @ galGal4
Exon Skipping
Gene
ENSGALG00000007181 | PGS1
Description
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHN9]
Coordinates
chr18:10099526-10106901:-
Coord C1 exon
chr18:10106368-10106901
Coord A exon
chr18:10102197-10102345
Coord C2 exon
chr18:10099526-10099668
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTGTTCTTCCTGCAGGCC
3' ss Score
12.78
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAGAGTGATGGAAGTAATCGACTCTGCCAGGACACGACAAGAACTCCTTCATGCAAAGACTTTCCACAGCAGCCAGCAAGGCAGCTCCATGTTACCCCAGCATGACTCTGAAGCATCTGAGGGTCTGAAACCAGAACCTGACACGTGGATCTATCCCTTAATCCAAATGAAACCTTTTGGGATTCAAATAGATGAGATGGTCACAGAGACATTGCTGACAGAGGCTGAACGAGATGCCAAGATATACCTCACCACGGGCTACTTCAACCTGACACAAGCTTACATGGACCTCATTCTGGGCACTAGGGCAGAATATCGGATTCTTCTGGCCTCACCAGAGGTGAATGGCTTTTTTGGTGCCAAAGGGGTGGCAGGTGCCATCCCTTCTGCCTATGTTTACATAGAACACCAGTTTTACAATGAGGTCTGCTGCCTTCACCAGCAGGAGAGGGTCCAGCTGCAGGAGTACTCCAGGGCTGGATGGACTTTCCATGCCAAAG
Seq A exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGTCTTCCCTGCCTAACCCTGATTGGGTCTCCTAATTTTGGATATCGATCCGTTCACCGTGACTTGGAAGCTCAGGTTGCAATAGTGACAGAAAATAAAGCTTTGCAGCAGCAACTCCACCAG
Seq C2 exon
GAGCAGGAGCAGCTTTACCTCTGCTCAGGTGTGGTGTCATCATCAACGTTTGAGCAGCCAAGTCGGCATGTGAAGCTGTGGGTGAAATTGGTAACGCCTCTGATCAAGAATTTCTTTTGAAAGAAGCAGAGTTGCAGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(63.9=55.3)
A:
PF130911=PLDc_2=FE(31.6=100)
C2:
PF130911=PLDc_2=PD(3.2=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGCACTAGGGCAGAAT
R:
GATGACACCACACCTGAGCAG
Band lengths:
248-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]