DreEX0006700 @ danRer10
Exon Skipping
Gene
ENSDARG00000075857 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr12:34105770-34115805:-
Coord C1 exon
chr12:34115730-34115805
Coord A exon
chr12:34108380-34108528
Coord C2 exon
chr12:34105770-34105931
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTTGGGTCATTATTTTACAGGTC
3' ss Score
9.15
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
GTGTGTCAGCTTGGCCAACAGAGTCGTGTCCACTTGCATGAATACCATCGCCCTGATTGGACGTTTCATGCAAAAG
Seq A exon
GTCTGTGGTATTATGTAGGAGGAAGAGACTGCCCCTGCCTCACCCTGATTGGCTCCCCAAATTTCGGCTATCGCTCTGTGCACAGGGATCTGGAGGCTCAGATCGCTATAGTAACAGAGAACGAGGAACTCCAAACGCAACTTCAACAG
Seq C2 exon
GAGCAGGAGGTGTTATATCAGAGCTCAACGCAAGTGTCAAACTCCACTTTTAACCAGCCGGACCGCCATGTAAAGCTCTGGGTCAAACTGGTTACTCCACTCATCAAGAACTTCTTCTGAGTTCAACAGGCCTGATGTGATGGATATCACTGTCTGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075857_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(16.4=100)
A:
PF130911=PLDc_2=FE(32.2=100)
C2:
PF130911=PLDc_2=PD(2.6=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAGCTTGGCCAACAGAG
R:
TCCATCACATCAGGCCTGTTG
Band lengths:
218-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]