BtaEX6090426 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000675 | PGS1
Description
Bos taurus phosphatidylglycerophosphate synthase 1 (PGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046395]
Coordinates
chr19:54409377-54422964:-
Coord C1 exon
chr19:54422443-54422964
Coord A exon
chr19:54413996-54414144
Coord C2 exon
chr19:54409377-54409505
Length
149 bp
Sequences
Splice sites
3' ss Seq
ACGTTTCCTTCTCCCTGCAGGCC
3' ss Score
13.61
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GGCAGCCAATAAGAGGGTCATGGACGTGATCAACTCCGCCAGGATGCGCCAGCAGATGCTGCACGCCCAGACCTTCCACAGCGACCCCCTCCTGACCCAGGAGGACGCCGCAGCTGCTGGAGACCGGAGGCCGGCCCCCGACACCTGGATCTACCCCCTGATCCAGATGAAGCCCTTTGAGATTCAGATCGATGAGATTGTCACCGAGACCCTGCTGACAGAGGCCGAGCGAGGGGCTAAGGTCTATCTCACCACTGGCTACTTCAACCTGACCCAGGCCTACATGGACCTGGTCTTGGGCACGCGGGCCGAGTACCAGATCCTGCTGGCCTCGCCGGAGGTGAACGGCTTCTTCGGGGCCAAGGGGGTGGCGGGCGCCATCCCGGCCGCCTACGTGCACATCGAGCGGCAGTTCTACAGTGAGGTGTGCAGCCTGGGGCAGCAGGAGCGGGTGCAGCTGCAGGAATACTGGCGCAGGGACTGGACGTTCCACGCCAAAG
Seq A exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGCCTGCCCTGTCTCACGTTGATTGGCTCTCCTAATTTTGGGTACAGGTCGGTTCACCGGGACCTGGAGGCCCAGATCGCTATCGTCACGGAGAGCCGAGCCCTGCAGCAGCAGCTTCACCAG
Seq C2 exon
GAGCAGGAGCAGCTCTACCGCAGGGCAGGCGTGGTGTCCTCTGCCACCTTTGAGCAGCCGAGCCGGCAGGTGAAGCTGTGGGTGAAGATGGTGACTCCGCTGATCAAGAACTTCTTCTGAGGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000675-'22-16,'22-13,27-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PU(67.1=65.1)
A:
PF130911=PLDc_2=FE(28.8=100)
C2:
PF130911=PLDc_2=PD(2.9=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGAACGGCTTCTTCGG
R:
CTTCACCCACAGCTTCACCTG
Band lengths:
250-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]