RnoEX0065391 @ rn6
Exon Skipping
Gene
ENSRNOG00000000129 | Phf24
Description
PHD finger protein 24 [Source:RGD Symbol;Acc:1559864]
Coordinates
chr5:58359498-58377084:+
Coord C1 exon
chr5:58359498-58359959
Coord A exon
chr5:58365730-58365863
Coord C2 exon
chr5:58377033-58377084
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTCATGAGAACTGACACCAGTCT
3' ss Score
-4.93
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AATTCTGCTTAAAGGACAAAGTATCTCCTATAACACCTGGAAGGGGGGATACTAGATGCTCAAAAAATAATGTGACTTGTGTTTGACAGACACAAAATAGATGTACAAGAAAATGAAAGTGCCTTTAAAGAGGGATCTGTGTATATGTACACATCGTTACTTTCCTACAATTAGTTGTAGATATGTTGTGACTTGGTCTTTTTCTTGCCCTCTTCAAAGCCTGGAGTTTGTTGCAATGCGCGTTATAGTTCTCAGAAACACTGGCCGCCTGACAAGCTATCTGTTTGGCTAGTCTGAAGGCTGAGGTTGCTGCAGCAAAAAGTGGGTTACACGACAGTACAGCTCTGCTGCTGGAGATGGAGGACCAATAGCCTCTGACAAAGCTGCACAAGGCGGAATGGAGCAGTCAAGGTCTTTGTGAAGGTTCCTCTGGCCACTCCCGAACCCAGTGGGAACCTGAAG
Seq A exon
TCTGTAGGTTACTGCCAGGAGACCAGCAACTAGAAACAGACTCCCAGGACACTGCATGGAGAGACTGGATTCCTAAAGCAACAGGCAGAGGAGAACAACTGGACCACTTGGGTTGCCTCCAAGACCTGCGGAGG
Seq C2 exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACAGTAGAGCAGGTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000129_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.938
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTGACAAGCTATCTGTT
R:
TCTGCACCTGCTCTACTGTCT
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]