MmuEX0030677 @ mm10
Exon Skipping
Gene
ENSMUSG00000036062 | Phf24
Description
PHD finger protein 24 [Source:MGI Symbol;Acc:MGI:2140712]
Coordinates
chr4:42917251-42933831:+
Coord C1 exon
chr4:42917251-42917414
Coord A exon
chr4:42922567-42922693
Coord C2 exon
chr4:42933616-42933831
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAACTGACACCAGTCTGTAGGTT
3' ss Score
-2.06
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGCGCGCGCCACCGCTGCCGCCGCCTCAGCCTGTCGTGCCGCCCGCGCCGCCCGCTCCCGGTGCTCGGCCCAGCACGTCGGCTCTGGAGCGGCCGTGGGCAGCGCGGGCCCGCGGCGTAGAGTCCGCCGGCCTCGGACCCGCGTCCCGCACGCGGACTGTCCCG
Seq A exon
GTTACTGCCAGGAGAACGGCGACTAGAAACAGACTCCCAGGACACTGGATGGAGAAACTGGATTCCTAAAGCAACAGGCAGAGGAGAACAGCTGGACCACTTGGGTTGCCTCAAAGACCTGCCGAGG
Seq C2 exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACAGTAGAGCAGGTGCAGAAGGTGAGCCTGGCTGTGTCAGCCTTCAAGGATGGGCTACGGGACAGGCCTTCCATTAGACGTGGGGGTGAGCTGCCAGGGTCCCGCCGTGGCACTGTGGAGGGCTCTGTTCAGGAAGTACAGGAGGAGAAGGAAGCAGAGGCGAGCGCCCCCGTGGTCCAGGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036062-'2-16,'2-12,9-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.700
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACGTCGGCTCTGGAG
R:
CTGAACAGAGCCCTCCACAGT
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types