MmuINT1026604 @ mm10
Intron Retention
Gene
ENSMUSG00000036062 | Phf24
Description
PHD finger protein 24 [Source:MGI Symbol;Acc:MGI:2140712]
Coordinates
chr4:42917251-42922693:+
Coord C1 exon
chr4:42917251-42917414
Coord A exon
chr4:42917415-42922566
Coord C2 exon
chr4:42922567-42922693
Length
5152 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
GAACTGACACCAGTCTGTAGGTT
3' ss Score
-2.06
Exon sequences
Seq C1 exon
GGCGCGCGCCACCGCTGCCGCCGCCTCAGCCTGTCGTGCCGCCCGCGCCGCCCGCTCCCGGTGCTCGGCCCAGCACGTCGGCTCTGGAGCGGCCGTGGGCAGCGCGGGCCCGCGGCGTAGAGTCCGCCGGCCTCGGACCCGCGTCCCGCACGCGGACTGTCCCG
Seq A exon
GTAAGCGAGGGCGGGGGCGGTGGGACCCCGCCGTCACCCCGAGGGGCGGGTCTGCGGTCCCGGACTCGGATCCTGGTGCGGGAGCCGCCCCCACGGGGCCCCTGTGCAAGTGGATGCACGCCAGTGACCGCCGCCTCTACCCCGAGAGCGTCCGTGGGACGGGCATGGAGGGAGACGCCCAGGGCGCTCTGCACTTTGTGCCTTGCACAGCCCCAGTGTGGAGGCACCCTCCCCAGGCCCCCAGGGGGGCCTTCTGTGTAAGTGGAGTGGCATCAGCGTAGTCTCTGGACTTGGCTCCGTGGGAGAACATCTGGGAACCTCAGGGACTTTCTCAGTGGTATTGGTGAACCTCAGGTGATCTCAGCCTGTGCCCCTAGAGATGCCAAGAAAGAACCTTTGGCTGGAGAAATGGGATCCATTTGTGGCATCATAGCTCCAAGGACTTTGGCACTGACCTCCTGAGGGACTCAGTGTGCCCTCATTTGTCCCCCTCAACATAGTGGAAAGGAGTGGGGACTCTATGGGGCTGTGGCCTTTGTTCATTCCATTTCTCACACTGCCCCAGTAGAGTGTCTCTTCTGAATGACAGCCCGGTTGGCTTCACGCTGGACTTTCAGGGAGACTGGAACTGCTTGTAAGAGCACAGGGCCCAAGGGGTACCAAGATCAGTGAGGCCTCCAAATCAAAGATAAGATATCTGAGCCTGTGAGCTTGACTATCCAGAAACACTAAGACCAAGTTTCTGGAGGAAGGACTAAGCGGGAGGGAAGCATTCTTGAGAACTAGTGTGCCAGGCACCGTGCTAGATCTGTTTAAACATCTTACATAATACTTAACAACAGCTTCATCAAATTGCCCCCATTTAAACATTAGGTATTTGTGACGCAGGCTTAGTACTTTGCCCGAGATCACAAATGACAAAGTCTGTTCTTCACATTTAACTCAGAGAAAAGTGTCAAGGAGGGACAGAAGAAAGAGAGGCTGTTTGTTACTAAGTTGTGCTGAAGGGTCAAGCGTGGAGCTTTGCCGTAGCATATGCTCCGCAGAGGTGATACTTGAAGGGAGGGGGGCAGCTTATCAGAGCATGCGGCCATTGGAGCAGTTATCCACTTAATCCCCTGATTTCAATGTATGGCTTCCTTTGTTGGTAGCACTACTGTAATGGTATGGTGGTCCTTGTCGGGAATTGCTTGGGAGGACTAGAGGGGCCACCTTCCCTGCTGCAGGACCTTGGGGGTGAAGAAGCAGAGACACTGTCACTTCTAGGAGTCACCCACACTTCCCTTGTGGCCCTGCATATGCACCAGTGGACAGTAATCCACAAATACCACCCAGGACACTGTTGATGAGTTCTGTGTGAGAAGCAGACGGGTGGAAAGGATGGGAGCCAAGAGAGGCTTGCTGGTCATCTGTCATCCGGGAGAGAACCAGATACAGCCATACCCCTGTCTCACCCCTCAACACTTCCATTTCAGCTGACTCCTAACGGTATAACTTTGGGCCCAAAGATAGATTCTTGCTTCTTATCCAAAATGGGAGTGTGAAAGGGCCAAGCCACGTAACTTACCACAGAGCTGTTCTGGAGTGTCCCTGTTCATCTTTGTCCTGTTCTACACAGCCTAACCTAGTATCCTTTCATAAAACTCTCCTCCTAGACCTGGGCCCCAATGAAAAAGGGCCGATCAGAGCATGGGTCCCTCACATATATACTCAGGCTTGGTCCTGGTTTCCTTTGAAAATATATATACCTACTTCAGAGACTGAGGCAGGGGGCTTGCCACAAGTTGAAGGCCAACCTGGGCTACTAGAGAGACTGTCTCAGAAAAACAAAACCAAGAAAACACTGTATTTCTGCACTGGCTATGGTAATCTGTGCCTGTTATCCTGGTACTTGGGAGGTAGAGGCAAGAGAATCTCAAGTCCAGCCTGGGCTGCATAGAAAGTTCTAGGCATTGTCTCCTAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATATTTCTTTGGGTGTCTGGGATTACATCTTGAGAAGAGGAAGCTACCAAGGAAAATGGATAACCTAACTGACCAATTGTCTTCCTTAAGTACTTGGCTCCTTAAGGATTGGATAGTTGTAGTACCTCATGCATAGCTCAACAAGCAAATCTGACAGAGGTTCATATTAGTTAGCATCTGACATAAAATTGTTTGTAATCCCCTTTCAGCTTAAATCCCCTCTCATTAGTTCAAATATATATAAATATATATATGTGTGTATATATATATATACATATATATGTGTATATATATAAAATACATATACCAGGATTGTCTCTGAGATATATGTATATTTCAGAGACAATCCTAGTAAACCCAAGTGCTGACCAGTGAGTGTGCTCTGGCCTTTCACAGCTCCCCAGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTTTAAGAGAAAACCAAGACCAAGCCTGCAAATATGGTGGCATTTGTTCTAATTCAGACACTTCTTTTTGTTTGTTTTATTTTGTTTTTTGTTTTTTCCAAGACAAGATTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTGCTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCTGCCAATCTCTGTCTCCTAGATGCTGGGCCAAAAGGCTCTCAGATATTTCTTGTTGGAGTATGAGGATGATGATGATGGTGGTGATGATGATGGTGATGATGATGGTGGTCTTTTCACTGAGGACTCTGAATATCACACTCCCTGGTAACTTGGGAAAATTACTTGATTGATCTAAGTGCTCCCCAAAACTTTGATCCTTGGTTCCATCTCCTAATGTCTAGTATTGAGTAAACATTAAATTTCAAAACTTGTCAGACTAGTGCCTGAGCATAGCCTTAATCTTCTCAAAAATAAAATGCTTCAATCCAAAGGGAAATAAGAGGAGAATGCCCCTCCCCCACTTGAGTATACACAAATGGGTATGGATTTTCAGCCTTGGATTTTCCATAGATTCTCTTGGCCACACTGTAGCCGTTTTCTTCTTCCCACACTACCCATGTATTTTTTAAGTGCTTCCTTTTCATGGATAATAAGAGCTCTCCAGGCCCATTTTCCACGGCTTCTCGTTTCTCCCAGCACACCTGTTCCTAAGTGGATCATCGTCTCCCATCTCTTCAGCTACAGTATCTGTTGTCTTTGGGTGCCACATGCCTGTCTAGCGATGCTTCCTCGTTCCCCAGAGTCACCTCACCTATCCATAGCTGACGGGAACATCATTATCTAGTCCCTTCCTTCAGTCTTAATGACTATGTTCTGATTGGAACTGTTCTACCAGCTTTGGGCTGAGAAGCATGGGCTGTCAGTGTCCAGCTGGACAGGCAACTCTTGGTTCCATTATAGCATCTCTCCATGCTCCACCCACCTGCCGGCAATCCTCTCAGAGGTCCGCACACACCCTAAGTGCTGCTGACCTGCCAGCACTGTGCTGTATAAACAGGAGACTTCCTGCCCTCGAGGAGTTTGCATAGAGTCAGTCTGCATTTCATCACTCGATTGCTATTAATACAAAGTGCAGGAAAAGTACCAGGGGAAATATGGCTTTGGAGGCTCCCCACGGTGGTCCGTGTGAGTGTACCGTCTCCCAGGTATCACCCACCGACAACTAACTGCTAAGATGAGCTTCTTCTTCATCTTCCAACCCCTGCCCAAGTTACTCTTACCCATACATATTGAGCAAACTGGCCACACGCACGCTTGCCTCCCTGTGCAAGTCATCTATGTGGATAGCACATTATGAGTTAGAGAACCCTTTACATGTTATGATCTCTGTTTGATGGAGATTGTTTCCTGTTGCTATGGTCTCTCTGAAACACTCAGTGATTTGGCTCCATTGCTCTCTTTTTCTTGTTTGTATTTGTCCTTTAAGCTTCAGTCTCCTTAAACAAAGGCCAGTGGTTACTACAGCCCCTCCCTGCCAGGCCTTAGGTTGTGGGAGAGTTCCATGCTGGAGAGCTATGAAAGGCCAGAACACACTCAGTGGTCAGCCCTGGGGTTTACCGGGATTGTCTCTGATCATCCTGGCCAAACTCCCTTCCCTGCCCCCCACTTCCCTGAATTCAAATGAATATTCTCTTTTAAACAAATATTTTAGGCATACTACATCAAACCAGTCCTTTGAGCTGATGCTAATTCATATGTGAGTACAGATTCCCTTGCCTATTTCTATCCAGCACCAGGGCCGGCTTCACAGCTCTAAGTCATGGTGGAGTCTCCATATAGCTCCATGCTTGGCATGTGTTTTTACCTCTTCCTGGAATGCTTTTTTTTTTTTTTCCTCATCCACTGGGTTAACTCCCACTCATCTTCAAAATTTAGCTCAAGCAACACCTTTTTTTTTTTAATCCTACACGTATGCCCCCTACACATGCACACACTCCTGCATCCTCACAGACTGAGACTCCATCTCTTCATCCTAGTGACAGCTATTAGCACTTGATTTGTGCCTAACACATAGTAGGCTGCACACACACACACACACACACACACACACACACACACACACACACGGGGTGGGGAGAGCTTATAGACTCAATAAGCAAGAGAGTGGCAAGATAGTTAAAGTGTAATAACTGCATAAATGAAGCCGAACCTGTGCTTCGGGGACCTAAGAGCAGAAAGCAGGGAGTGCCTCTCCATCTTGCTGGGAAAATTCACTTGCTGAGTGCAGTCCCACCAGCCAATCACTGCCAGTGCGATGTTCCTTAACTGTTGCTCTGCTTCTGTGGGAAGTCAGAGCTGTAGCTTTTAATGAAGACAGCCCAATCCCCAGAGGCTAAAGATCATGCCATCGTTTTGCTCTCATGTATATTAAAGCCTCAGTAAATATTAAGCAGCAGCAGGCTTGTCCCTCCTGCCTCGGAGCCTGGAGCTGAGCTGGGAGACAGTTTTACTCGGGCTCCAGCCTGTCTGCTTCTTAGAATCTCCAGAAAACCTCTCTGCAGTTCAGGTGACAGTCTTCCTAGATAGGCAGAAGAGGACCGAAGCAGATGGGGAGGGTGGCTTCGGGGTCTACAGTCATGAGAACTGACACCAGTCTGTAG
Seq C2 exon
GTTACTGCCAGGAGAACGGCGACTAGAAACAGACTCCCAGGACACTGGATGGAGAAACTGGATTCCTAAAGCAACAGGCAGAGGAGAACAGCTGGACCACTTGGGTTGCCTCAAAGACCTGCCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036062:ENSMUST00000107976:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types