GgaINT0063021 @ galGal3
Intron Retention
Gene
ENSGALG00000001900 | KIAA1045
Description
NA
Coordinates
chrZ:7888601-7894194:+
Coord C1 exon
chrZ:7888601-7888781
Coord A exon
chrZ:7888782-7893821
Coord C2 exon
chrZ:7893822-7894194
Length
5040 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GCACCTTTCCCCCCTTGCAGAGC
3' ss Score
11.35
Exon sequences
Seq C1 exon
AGCGCACGGCTCTGGCTGCCCGGGTACCCGCCTCGCCGCTCCTCTCCCCGGCGGGGATTCGCGTGCAGAGCGCGGGATGCGCTGAGCACCCGCGGGGTGGAGAGGACGTGGTGGCCGGGAACAGCGGCGATGGGCATCGTATGGGCAGCTCTCTAGGGCTTGTGCTCTCAACAGGACCCTG
Seq A exon
GTAAGTGGCTTTTTTTTTTTTTTGCTGGTGCTGGAGCTTTGCTCGGCGAGTGGCGTAGGCTGGCCGTGCATCGTGACACCCGTGGGTGGGTCACCCTGGGGTCCTGGCGCCGGGGAGGGGGGCACCTGGGATGGGGCACCTGGGAGAGGGGGTGTGGACGGTGCAGAAGGGTCCTGCGCAGGCGGTGGGGTTCAGATGTGGGAGCTGGGGATGAAGATGAGGAGGAGAAGTGGGGAGCTGGGCGGGAGCTGTGTCTGCTGCAGGGAAGGGACTTTGCTGTCATGGCATTTTCATCCCCCTCTGGGAGATGGAAACGTGCGACACACCTATAACATCAGCCATGGTGCGGCAGGATGGGCAGCCTAATCCTGCAGGGACAGCAGCCAACAGCCGGGTGTCCCCGGGAGAAAGACACTACACAGCTGGGGCTCAGCCCACCTCCAGACCTTCCGTGCCCCTGCAGAGGGGGAGGAGGTTGCTACCAGCATCGGAAGCTGCCGACCCTTCTGCCACACTGCAACCAGGTCACCTCCCTGCAGCAGACCTGACAGCATCCTTGCCCCAACACGCATCATCTGCCAGGGAGAGGGGATGAGGGGCTGCTGCCAGATCCCTTTGGGAACCCCTGGCTGCACAGGTCAGATCAGGGGATGGAATATGGGGTGCCCTGTGCAGGCAGCAGCAGGCAGGGTTGTGCCAGAGCTGCATCAGCTCCTCCCAGTACTGTTCACTGCCCTTCAGACCAAGCTGCCTTGGGTCCTGGGGTCTCTGGGTTGTCACCCACATCTGCACTCCATTCCTAATGCTGCTCCCCACAGGGCTGCAGCCCTGGGACTGCTTCAGGCACAGCACTGAGGATAAAATCACCATGAGACTTGTGAGGGCAAGGAACTGACCTGGCCCACAGGAGCCAGGATTGGGTGGAGGAAGAGGGGACAAGTGCATCCTTTCCCAAGGGGGTCCTGCTTCTCACACACCCCTGCTGCATCTCCTTCAGGACTGGTGCAAGGGATACCAATCCGCCTGCTCATGGCTGCATCACACCAAGACCTCATTTTGTTCACTGAGCTGCTGCCCACCCTGCACCCAAAGCCAGCCCCTGTGCTATGCCCAAAGCCCTCGCAGCAGCCCCCCCAGAACCTTACTGGGCTGTAACAGCGACCCTGTGCTCCCAGCTGTTCTGTAACACATCCGCCCACAGCTGGTTCCCGACACATCCATCCTGTGCTTGCAGCCACCACTACGCCCACGCTGCACTGTGTCGCTCCGCACCCACCCGTGACACATCCACCCGACGCATCCACCTGCGCCATCACCCCCTCTCTGTGTAAAGCCAAAGCCAGTACACCAGCCCCCAGCACAAGGCTTTGGTGCCGAGGCCAGCCAAGCTCCCTCCTCCCAGGCTGCCTCCATGCTGGCCACCAGCCCCAACACAACTGTGCCTCAGTTTCCCCATGCAGATTGCCCTGATGACCTGGGAAGAATGATCCATCAGTGCTCGAGGAATGAAGTGCTTCCTCGCTGTGGTTCACTCCAGAGATGAAGCAGCAAAGAGCATTTGCCACCAGAAGAACACAGGGAAGCAGTGCAGCTTGGGGGATAAGGCAGGATAGGATGTAGATGATTGAAGCAAAGGAAAGGAGTGAAGATGCCCACAGCCGCTGCAATTGCCCCTGACAGGACTCAGCTGAGCTGGGTGATTGCAGCCAAAACTGGTTCAGATTTAGCTCTTCGATGGCCACAGCCTAAAAATAGCCCCTGTGTTGGTGCCCAGCAGCAAGGTCAAGGCCCCAGTGCTTCAGGCCAAGGTAAACAGGGTGACAGCACCACATCTTGAACTGCTGGGCATCTCCAGGGGCAGCCACAAACAGCAACAGAGCCAATTTCCCGCAGAGACACACAGAGACACAGGATGCAGTGGTCAGGATGTGAGTAGCAGGAAGCTGGGCTGCTATGGGGAAGGATGCCTTTGGTCCCCTTCACTAATCCAGGGGACACTGGGAGAAGAGGGACCTAAGGAGAGCAGTGCAGCATTGGGGTTTTTGGGAAGCTGTGGGCCTGGGTCTCGCTGGGTGATAGAGACAAGGGTGAAGCCATTCAGCCCCTAAAGATACAGGCATCCTATTGCAGAGACACCCAGAGTGGGATAAAATTGGGTTGGAAGGAGTCCAGCCATACAGTTCCTGCAGAGACAGGGAGGCCAGCAGGGCTGAGAACAGACACAAGCCATGACAGAAGTGTGGTGGTCTCTGGTCTCAATGCTGGGCATGCAGCAACTGGTGGCAGGGGACACTCAGCTTGGCACTGGAAGAGGATGATCACCTGGGGGCAGGAAGGTAGGCTGGAACACTCTGGCAATGGCATGAGGCATGTCACAAGCCCATGCTTCCCCAGCCTGGGGAACATCAACTACAGGGGAGAGCGGTGTCCAAGTGCTCTCCTTTCTTCTGCAATGTTGAATAGGATGAGGCCAGCAGCAGACCAATGAAAGCTCAGGGACACAGGAACCAACAAAGGCAGCTCAGGAGGTTGAGGAGTTCTCCCTGCTGTACCCCGAGCTCAGTGGGTTGCAGGCAGAGTTGCAACGCTGCCCAGCAGGAGAGTTGTCCATACCGATGGCCAGTGGGCTTTTGAGCCACCTGGGCAGGGGGTGGCCATGCTGCAAGGAGGCAAAGATCCAGGTATCTTCCCTCCCTCCAGCATAGCCGCAGCTATGCTGCTGCTGTGGCTTGAACACGTGCCTCCAGCTCTCCTCCGCTCCCACCTTTCCAAAGCCCAGGCAGCTGTGCCGACTGCCAGCCATAAGCTGGGTGCGGGAGCTGATGGGTGCAAATACCCCTGCTCACATGTGCACACTCCCAAGACATATGCCAAGCCTGCAAAGTGGCTCCTGCGGACACGTGTCCCCCTGCACAGGGGATGGGGCACCATGTGTGCACACACCGCACTGAATGTGAGAACGTGTGCACAGGGGATGGGGCACCATGTGCGCACACGCAGCATTACATGTGAGAATGTGTGCACAGATGGTCTTAGAATTGGAGGGGCCAGAAAGCTACATGCATATATGCATGTCGTAGTGTTTGTTTTTGCATGCCTATGCATGTGTGTGTGCATCTACTCACGTGAACAGGACTGGTGCAGCAGGGGCTGGCCAGGCAGGAGTGGGAGTGCAGGGCCATGCATCCGTGGCATGGCAACTTTGGTGCAGGCGCAATCTGCTGCCTGCCTGCATGCTCAGATCAGATGTGGGGCAGCTGTAATTACTGTGCCGATGCTCCCTGCTGCAGCAGTGCCTGCAGAGCTGGGTCATCCTGCCACTGTGAAATCCCAGTGATATCGTTGCTGCTAATTACCTTGTTCCCCAGGAACATCTCTGCCTCCTGGCGTGCTGCAGAGGCCAGAGGGGCTGGGAGATGGCGGTGCTAATGATCCTCCCTTACATAGGTACTGAGTGTCACCAGTTGTGCAGCTCCAGTAAGGACAGGGAGGCTACAGGGCTCCCTGGTGCAGGCTGGAAGCTCCTCTTGTCTGCAGTATCTTCCCCAGTTCCACTCCAGCCAGGCACAGCACAGTGCTGGGATCCCTCTGGGGTGATGCTGTGCCCCAAAGCACTTGAGAACAAATTTTCCTTCTCTCTAGCTTCAGCTCACCCTATCCTTGCACTTGTGCAGCCTGGAATCACGTCCACCTGCACTGAGACAGAGCCCAACCTGTTTTGTGCCACTGCTGCCCTCCCCATTTTGCCCCAGGCTGCTCTGCCCTCAGTTCTGCACCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTGCTATGTAGAACGCTTGCGATCCATCCTTGTTAAGCTTAACCTGCCTATCCAGGATGGGGGATGGAAGATGCCCCTGTTCTCCTAATTTCCTTGATCAAAAATCGGCGAGGGTTTGGGTCCTTCTCCCCACAGCCACCATGGTCACCATCCTAGCACAGTTCCCAGTATACTATGCTAGGGTATATATTTTGGGGACCAGGGACTTGTCTCAGTGGTACAGCAGTAAGGCGCAGCACTGCACCACAAGAGCTTAGCACTGAGCACCTTTCCCCCCTTGCAG
Seq C2 exon
AGCCATGGGGGTGTTGATGTCAAGACGGCAGACGGTGGAGAAGGTGCAGAAGGTCAGCTTGGCTGTGTCCGCTTTCAAAGATGGGCTGCGGGAGCAGCCAGTGGCACGGAGGCGGGCGGAGGCTGGGGGCACACGCCGGGGGACACTGGAGCAGACAGTGCAAGAGGCAGAGGAGGAGGCATCCGCAGGGCCCTCACAGCCAGAAGAAGTCAGCGCCAGCAAGGCTGCCTGGGAGCGGCTGCGGGATGGCCGAGGTGTGGAGCCAGAGGAGTTTGATCGAGCCAGCAGGTTCACACCGCCTGCCTTCATTCGGCCCCAGCGAGAGCTGCATGATGATGAGCCACTGGACATCAGCCTGGAGCAGCGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001900:ENSGALT00000002939:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.650
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF137711=zf-HC5HC2H=PU(28.0=21.1),PF0013017=C1_1=PU(6.5=2.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]