RnoINT0110438 @ rn6
Intron Retention
Gene
ENSRNOG00000000129 | Phf24
Description
PHD finger protein 24 [Source:RGD Symbol;Acc:1559864]
Coordinates
chr5:58359498-58365863:+
Coord C1 exon
chr5:58359498-58359959
Coord A exon
chr5:58359960-58365729
Coord C2 exon
chr5:58365730-58365863
Length
5770 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTCATGAGAACTGACACCAGTCT
3' ss Score
-4.93
Exon sequences
Seq C1 exon
AATTCTGCTTAAAGGACAAAGTATCTCCTATAACACCTGGAAGGGGGGATACTAGATGCTCAAAAAATAATGTGACTTGTGTTTGACAGACACAAAATAGATGTACAAGAAAATGAAAGTGCCTTTAAAGAGGGATCTGTGTATATGTACACATCGTTACTTTCCTACAATTAGTTGTAGATATGTTGTGACTTGGTCTTTTTCTTGCCCTCTTCAAAGCCTGGAGTTTGTTGCAATGCGCGTTATAGTTCTCAGAAACACTGGCCGCCTGACAAGCTATCTGTTTGGCTAGTCTGAAGGCTGAGGTTGCTGCAGCAAAAAGTGGGTTACACGACAGTACAGCTCTGCTGCTGGAGATGGAGGACCAATAGCCTCTGACAAAGCTGCACAAGGCGGAATGGAGCAGTCAAGGTCTTTGTGAAGGTTCCTCTGGCCACTCCCGAACCCAGTGGGAACCTGAAG
Seq A exon
GTAAGTGCCCCACCGTGAGCCCTGAGACCTGGGTGGTGCGACAGAGTCGGCTGGCTGAGTTCTTCCCACCCCGGGCAGGTGCTGATCGCAGCATCCACACAGACCCCGCTCTGCCTTGGGTGTATGCGGGTGGGCCAGTCCCCGCAGCCCCTGCAGCGCCAACCGGGTCCAGCTCCCGGGGCGCGCTGACCTTGCCGCGGGCGGCCGGGCTGGCGCAGTCCCCGCGCCGCATTGCCGGCTGCTCGTGCGGGCGCCCCCTGGCACTGGGACCTCCCGCTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCAAGTGGACGCACCCCAGTGACCGCTGCCTCTACACGGGAGAGAGTCCGTGGGACGTGAAGGGAGACGCCCAGTGCGCTCTGCACTTTCTGCCTTGCACAGCCCCAGTGTGGAGGCACCCTCCCCAGGCCCCCAGGGAGGCCTTCTGTGTAAGTAGAGAGGCATTAGGGTAGTCTCTGGACTTGGCTCCATGGGAGAACATCTGGGAACCTCAGGGACTTTCCCAGTGGTGTTGGTGAACCCCAGGTAATTTCATCCTGTGCCCCAGAGATGCCCAGAAAGAACCTTTGGCTGGAGAAATGGGATCCATTTGTGGCATCATAGCTCCAAGGACTTAGGCACTGACCTCCTGAGGGATTCAGTGTGCCCTCACTTGTCCCCCTCAACATAATGGAAAGGAGTGGGGACTCTATGGGGCCGTGGCCTTTTTTCATTCCAGTTCTCACTCTGCCCCCATTAGAATGTCTCTTCCGAATGATAGCCCAGTTGGCTTCAAGCTGGACTTTTGGGGAGACTGGAACTGCTTGTAAGAGCACAGAGTCTAAGGGATACCAAGACCAGTGAGGCCTCCGAACCAAAGATCTCTGACCCTGCGAGCTCGACTCTCCAGAAACAGTATACCAAGTGTCTGGAGGAAGGAATAGGGGGGAGGGAAGCATTCTTGAGAACTAGTGTGCCAGGCACTGTGCTAGATATGTTTAAACACCTTACATAATACTTAACAACAGCTTCGTAAAATTACCCCATTTAAACATTAGGTATTTGTGACGCACGCAGGCTTTGCCCGAGATCACAAATGAAGCCTGTTCTTCACATTTAAGTCAGAGAAAAGTATTAAACAGGGAAAGAAGGAAGAGTGGATGTCTGTTAATAAGTTGTGTGGACGTGTCAGGCATGGAGCTTTGGAGTATGCTCAGAAAGGGATGCTTAAAGAGAGGAGGACGGTTTAACAGAACATTCGACCATTGGAGCAGCTGTCCACTGAATCCCGGGATCTCAACTCGTGGCTTCCGTTGCTGGTAGCACTACTGTAATGGTGTGGTGGTCTTTGTCAGGGGTTGCTTGGGAGAACTCAAGGGGCCACCTTCCCTGCTGCAGGACCTTGGGGGATGAAGAAAAGGAGACAGTCACTCCCTTGTGGCCCTGTATGTGCACCAGTAATCCGCAAACACCCCAGGACACTGCTGAACAGTTCTGTATGAGAAACAGGAGAGGGGAGAGAGGATGGAGGCCAAGGAAGGCTCACTGGGAATCTGTTGTCCAGGAGAGAAAGCCTGAACTTGATCCAGTAATGCCCCTTGTCTCACCCCAACACTTTCATTCCAGCTGAGTCCTAAGGGTATAACTTAGAGCCCAAAGATAGATTCTTGCTTCTTATCCAAAGAGCGAGTGTGAAGAGGCCAAGCCATGCAATTTACCACAGAGCCATTCTGGACTGTTTCTGTCCATCTTCATCCTCTTCTGCACAACCAAACCTAGCATCCTCCTTTAACAAAACTATCCTCCTAGAGCTGGGCTCTGACGACAAAGAGCCAATCAGAGCATAGGTCCATCAAATATATATATATATATACATATATATATATATATATATGCATGCTTGGTCCTGGTTTTCTTTGAAAACATATATACCTACTTCAGAGACCGAGACAAGAGGCTTGCCACAAGTTGAAAGGAAGGCCAGCCTGGGCTATGAGAGAGACTGTCTCAGAAAAACAGAGCCAAATGAAGAAACCAGAAAACACTGTGTTTCTGCAATGGCTGTGGTAATATATGGCTAGTACCCTGGCATGTGGGAGGTAGAGGTAGGAGAATCACAAGTTCAAGGCCAGCCTGGGCTGTATAGAAAGTTCTTGGCATTGTCCCAAAAACAGAAGATAAAAAGAAGTGTTTCTTTGGGTGTCTGGGATTACACAGTGAGAAGAAAGAGGAAGCTACCAAGGAAACCGAATAACCTATCTGACCCATTGTTAGTTGGTCTTTTATCTTCCTTAAGTACCTGGCTTCTTTAAGGTTCAGATAGATGTAGTACTTCATGCACAGCTCCACAAGCAAATCTGACAGAGGCGCGTATTGGTTATCATCTGATATAAAGTTATTTATGATCCTCTTTCAACTTAAACCCCTCTCATTAGTTCAGCAGGGATATATATATATTATATTATATATATTATAGTGATATAAATAATATATAATATATAAATAATATTGTTTTAAGAGAGAAAACCAAGACCAAGCCTGCAAATATGGTGGTATTCGTCCTAATTCAGACATATCTTTTTGTTTAGGCTTGGTTTGTTTTTTTCAAGACAGGGTTTCTCTGTGTGGCCCTGGCTGTCCTGGAACTCGCTCTGTTGACCAGACTGGCCTGAACTCAGAGATCTGCTTATCTCTGTCTCCTAAGTGCTGGGCCAAAAGGCATATTTCCCGTTGGAGTATTTTGTTGTTATTATTATTATTGTTATTGTTGTTGTTATTATATTATTTTTTTCATTGAGGACTCTGAGAACCACACTCCCTGGTAACTTGGGGAAATCCCTTTATTGGTCTAAGTTCTCCCCAGAACCTGGATCCTCGGTTCCACCTCCTGATGTCTAGCATTGAGTGAACATTAAATTTCGAAACTTGTCAGAACAGTGCCTAAGCATAGTGTTTCTGGGTGGCCTTAATCTCATAAACACTTGAGTGCACACCAATAGGCATGTATGCCTTTCCAGCCTTGGATCTTCCATAGATTCTCTGACCATGCTGCAGCCATTTTTTTCTTCCAACACTACCCATGTATATTTTGAAATGTTTCCTTTTCTTGGGACATGGATAATCAAACCTCCCCACATGCATTTTCCATGGCTCCATGTTTGCTCCCATCACACCTGTTCCTAAGTAGATCATATTCACGCTACCGGTCTCCCGTCTCTTCAGCTACAGTACCTGTTGCCTTTCCGCACCACAGGCCTGTCTAGCAATGCTTCCTCATTCCCCGGATTTAGGGATTCGTATTTGACGGGGACATCATTATCTACTCCATCTTTCGGTCTTAACCCCTAAGTTCTGGTTGGAATCGTTCTACCAGCTTGGGACTAAGACGCATGGGCTAGTGGTGTCCAGCTGGAGACAGGACTATTGGCTGCATTATAGCATCGTTCCGTTCTCCACCCACCTCCGAGCAACCCTCTCAGGGGTGGGCACACACTCTAGGTGCTGCTGACCTGCCAGCACTGTGCTCTGTAAGCAGGAGGGGTCTCACCCTCGAGGAGTTTGCACAGAATCAGTCTGCATTTCGTCACTCAATCAATATCAAGGGCAGGGAAAGTATGAGGGGAAGTGCAGTGTGACAGGCTATCGATGGTGGTCAGTGGGAGTGTGCCGTTTCCGGTGTCACACACCGACGACTAACTGCTAAGCTAGGCTACTTTCAGGCAGCCACAGTCCAACCCCTGGTAAAGTTACCCTTGCCCATACGTGCCGAGGAAACTGGTCACATGCACTCTTGCCTCCCTGTGCAAGTCATCTACGTGGACAGAGGCATTATATTACGAGTTGCAGAGCCCTTTACATGTTATGATCTCTGACGGAGACTGTTTCCTGTTGCTATGGTCTTCTCTCTGAGACACTAGTGAGGCCGCAGCCTTGCCCTCTTTTTCTTGTTTCTGTTTGTTCTTCAAGCTTATGTCTCCCATAGACAAAGCTCCAGTGATTAACAGTCTCTTCCTGACAGGCCTTAGGTTGTGGGAGAGTTCCATGTTGGAGAGCCGTGAAAGGTCATCTCTGGGATTTACCAGGATTGTCTCTGATCATCCTGGCCAAACTCCCTTCCCTGCCCCTCACTTCCCTGAATGCAAAGGAACATTCTCTTTTAAACAAATATTCTAGGCATACTACATCAAACCGGCTCTTTGAACTGATGCTAATTCATGTGCGAGTGCAGATCTCCTTGCCTATTTCCATCCAGCACCAGGGCCGGCTTCATAGCTCTAAGTCATGGTGGAGTCTCCATATAGCTCCATGCTTGGCATGTGTTTTTACCTCTTCCTGGAATGCTTTTTTTTCCCCTCATCCACTGGGTTAACTCCCACTCATCTTCAAAATTTAGCTCAAGCAACACCTTTTTTTTTTAATCCTACACGTATGCCCCCTACACATGCACATACTCCCTGCATCCTCACAGGCTGGGACTCCATTCCTCCATCCTCCTAACAGCTATTAGCACTTGATTTGTGCCTAACACATAGTAGGCTGCGCGCGCGCACACACACACACACACACACACACACACACACACACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGATAGAGAGAGACAGAAACAGAGAGAGACAGACAGACAGAGACAGGCAGAGACACAGAGAAACAAAGAGAGAGACAGACAGACAGACACAGAGACAGGCAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACAGAGTGATAAGCAAGAGGGTGGTAAGAGTTAAAGTGTAATAAGCTGCATAAGTGAAGCCAAACCCGTGCTTTGGGGACCTAAGAGCAGAAAGCAGGGAGTGCCTCTCCATCTTGCTGGAAAAATTCACTTGCTGAGTGCAATCCCACCAGCCAATCACTGCCAGTGTGATGTTCCTTAACTGTTGCTCTGCTTCTGTGGGAAGTCAGAGCTGTAGCTTTTAATGAAGACAGCCCAATCCCCAGAGGCTAAAGATCATGCCATCATTTTGTTCTCATGTATATTAAAGCTCTGTGAGCCTTCAGTAAATATTAAGCAGCAGCAGGACGTCCCTCCTGCCTCACAGCCTTGAGCTGAGGCTGGGAGACCGTTTCATCCGGCCTCCAGCCCGTCTGCTTCTTAGAATCTCCAGAAAAACCTCTCTGCGGTTCGGGCGACTGTCTTCCTAGATAAGAAGTGGACCCAAGGAGGACGGGAGGGTGGCTTCAGGGTCCACACTCATGAGAACTGACACCAG
Seq C2 exon
TCTGTAGGTTACTGCCAGGAGACCAGCAACTAGAAACAGACTCCCAGGACACTGCATGGAGAGACTGGATTCCTAAAGCAACAGGCAGAGGAGAACAACTGGACCACTTGGGTTGCCTCCAAGACCTGCGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000129:ENSRNOT00000000141:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]