MmuEX0030678 @ mm10
Exon Skipping
Gene
ENSMUSG00000036062 | Phf24
Description
PHD finger protein 24 [Source:MGI Symbol;Acc:MGI:2140712]
Coordinates
chr4:42922567-42933997:+
Coord C1 exon
chr4:42922567-42922693
Coord A exon
chr4:42933616-42933667
Coord C2 exon
chr4:42933779-42933997
Length
52 bp
Sequences
Splice sites
3' ss Seq
AAAACTGATTTTGTCCACAGAGC
3' ss Score
8.46
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTACTGCCAGGAGAACGGCGACTAGAAACAGACTCCCAGGACACTGGATGGAGAAACTGGATTCCTAAAGCAACAGGCAGAGGAGAACAGCTGGACCACTTGGGTTGCCTCAAAGACCTGCCGAGG
Seq A exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACAGTAGAGCAGGTGCAGAAG
Seq C2 exon
GAAGTACAGGAGGAGAAGGAAGCAGAGGCGAGCGCCCCCGTGGTCCAGGAAGAGAGCAGTATCAACCGCGCAGCCTGGGAGCGGCTCCGAGATGGGCGTGGCGTCGAGCCTGAGGAGTTTGACAGGACCAGCCGATTCACGCCTCCTGCCTTCATCCGGCCCACGCGGAAGCTGGACGATGACAAACCTCCAGATATCTGCTTGGAACCCCGGGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036062_MULTIEX1-2/5=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.764 C2=0.601
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGACTAGAAACAGACTCC
R:
CCTCTGCTTCCTTCTCCTCCT
Band lengths:
139-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types