HsaEX6061064 @ hg38
Exon Skipping
Gene
ENSG00000122733 | PHF24
Description
PHD finger protein 24 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr9:34958319-34972531:+
Coord C1 exon
chr9:34958319-34958401
Coord A exon
chr9:34971295-34971676
Coord C2 exon
chr9:34972346-34972531
Length
382 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCTTTTTGTCCACAGAGC
3' ss Score
11.89
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CTCGGGCTGCCGTGGGCTGCGCGGGGCCCGCGGTGTGTAGAGTCCGCCGCCCCGGAGCCGCGTCCCGCACCCGGACGGTCCCG
Seq A exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACAGTGGAGCAGGTGCAGAAGGTGAGTCTGGCTGTGTCTGCTTTCAAGGATGGGCTGCGGGACAGGCCTTCCATCCGACGCACAGGTGAGCTGCCAGGGTCCCGCCGTGGCACTGTAGAGGGCTCCGTCCAGGAGGTACAGGAGGAGAAGGAAGCAGAAGCAGGAACCTCGGTGGTCCAGGAAGAGAGTAGTGCCGGCCGCGCAGCCTGGGAGCGGCTCCGAGATGGGCGCGGCGTGGAGCCTGAGGAGTTTGACAGGACAAGTCGATTCACACCCCCTGCGTTCATCCGCCCCACCCGGAAGCTGGATGATGACAAACCTCCAGAAATCTGCCTGGAGCCCAGAGAGCCT
Seq C2 exon
GTTGTCAACGATGAGATGTGTGATGTTTGTGAGGTCTGGACAGCTGAGAGCCTCTTCCCGTGCAGGGTCTGCACCAGGGTTTTCCATGATGGCTGCCTGCGCCGCATGGGCTACATCCAAGGAGACAGTGCAGCGGAGGTGACGGAGATGGCCCACACAGAAACAGGCTGGAGCTGCCACTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122733-'1-6,'1-4,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.746 C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCGGTGTGTAGAGTCC
R:
ACAGTAGTGGCAGCTCCA
Band lengths:
243-625
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains