HsaEX6061064 @ hg19
Exon Skipping
Gene
ENSG00000122733 | KIAA1045
Description
KIAA1045 [Source:HGNC Symbol;Acc:29180]
Coordinates
chr9:34958316-34972528:+
Coord C1 exon
chr9:34958316-34958398
Coord A exon
chr9:34971292-34971673
Coord C2 exon
chr9:34972343-34972528
Length
382 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCTTTTTGTCCACAGAGC
3' ss Score
11.89
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CTCGGGCTGCCGTGGGCTGCGCGGGGCCCGCGGTGTGTAGAGTCCGCCGCCCCGGAGCCGCGTCCCGCACCCGGACGGTCCCG
Seq A exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACAGTGGAGCAGGTGCAGAAGGTGAGTCTGGCTGTGTCTGCTTTCAAGGATGGGCTGCGGGACAGGCCTTCCATCCGACGCACAGGTGAGCTGCCAGGGTCCCGCCGTGGCACTGTAGAGGGCTCCGTCCAGGAGGTACAGGAGGAGAAGGAAGCAGAAGCAGGAACCTCGGTGGTCCAGGAAGAGAGTAGTGCCGGCCGCGCAGCCTGGGAGCGGCTCCGAGATGGGCGCGGCGTGGAGCCTGAGGAGTTTGACAGGACAAGTCGATTCACACCCCCTGCGTTCATCCGCCCCACCCGGAAGCTGGATGATGACAAACCTCCAGAAATCTGCCTGGAGCCCAGAGAGCCT
Seq C2 exon
GTTGTCAACGATGAGATGTGTGATGTTTGTGAGGTCTGGACAGCTGAGAGCCTCTTCCCGTGCAGGGTCTGCACCAGGGTTTTCCATGATGGCTGCCTGCGCCGCATGGGCTACATCCAAGGAGACAGTGCAGCGGAGGTGACGGAGATGGCCCACACAGAAACAGGCTGGAGCTGCCACTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122733-'1-5,'1-3,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.746 C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0013017=C1_1=WD(100=69.4),PF0062824=PHD=PU(93.3=90.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCGGTGTGTAGAGTCC
R:
ACAGTAGTGGCAGCTCCA
Band lengths:
243-625
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)