GgaEX0002306 @ galGal3
Exon Skipping
Gene
ENSGALG00000001900 | KIAA1045
Description
NA
Coordinates
chrZ:7888309-7895139:+
Coord C1 exon
chrZ:7888309-7888781
Coord A exon
chrZ:7893822-7894194
Coord C2 exon
chrZ:7894954-7895139
Length
373 bp
Sequences
Splice sites
3' ss Seq
GCACCTTTCCCCCCTTGCAGAGC
3' ss Score
11.35
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
Exon sequences
Seq C1 exon
CAGCTCGGCCCCGGGGCCAGAAGATTTGCAGGCAATACTTTTATTGGTATCTCTCAGCCAATGCCAGCCCAGTTAAAAAAAAAAAAAAAAAAAAAAAAGCCCCATCTCTCAGAGAGCTGTTTAACACAGCTCAGGCAGCAATTGGTACAGGGACAGCAAACCAGGCTGCATCTGCTCAGCCCCAGTCACAAGCTCCCTGCTTCCTCCGAGTGTGTGTGTGTGTGTGTGTGTGCGCGCTAGACACTGGCATCCGCTCTCAGCATCTCGCTGTCTCCTGCATCCTCCGGCGCTCAGCGCACGGCTCTGGCTGCCCGGGTACCCGCCTCGCCGCTCCTCTCCCCGGCGGGGATTCGCGTGCAGAGCGCGGGATGCGCTGAGCACCCGCGGGGTGGAGAGGACGTGGTGGCCGGGAACAGCGGCGATGGGCATCGTATGGGCAGCTCTCTAGGGCTTGTGCTCTCAACAGGACCCTG
Seq A exon
AGCCATGGGGGTGTTGATGTCAAGACGGCAGACGGTGGAGAAGGTGCAGAAGGTCAGCTTGGCTGTGTCCGCTTTCAAAGATGGGCTGCGGGAGCAGCCAGTGGCACGGAGGCGGGCGGAGGCTGGGGGCACACGCCGGGGGACACTGGAGCAGACAGTGCAAGAGGCAGAGGAGGAGGCATCCGCAGGGCCCTCACAGCCAGAAGAAGTCAGCGCCAGCAAGGCTGCCTGGGAGCGGCTGCGGGATGGCCGAGGTGTGGAGCCAGAGGAGTTTGATCGAGCCAGCAGGTTCACACCGCCTGCCTTCATTCGGCCCCAGCGAGAGCTGCATGATGATGAGCCACTGGACATCAGCCTGGAGCAGCGGGAGCAG
Seq C2 exon
GTCCTCAATGATGAGATGTGCGAGATCTGTGAAGTGTGGACAGCCGAGAGCCTCTTCCCCTGTCGCGTCTGCAACCGGGTGTTCCACGATGGCTGCCTGCGCCGCATGGGCTACCTGCAGAATGATAGCGCTGTGGAGGTGACGGAGACTGCACATACCGAGACAGGCTGGAGCTGCTACTACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001900_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.650 C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
PF137711=zf-HC5HC2H=PU(28.0=21.1),PF0013017=C1_1=PU(6.5=2.4)
C2:
PF137711=zf-HC5HC2H=FE(65.6=100),PF0013017=C1_1=PD(89.1=66.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCGCTGTCTCCTGCATC
R:
CCACAGCGCTATCATTCTGCA
Band lengths:
349-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]