RnoEX0065393 @ rn6
Exon Skipping
Gene
ENSRNOG00000000129 | Phf24
Description
PHD finger protein 24 [Source:RGD Symbol;Acc:1559864]
Coordinates
chr5:58359498-58378179:+
Coord C1 exon
chr5:58359498-58359959
Coord A exon
chr5:58377196-58377414
Coord C2 exon
chr5:58377994-58378179
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTGTGGAGGGCTCTGTTCAGCAA
3' ss Score
-1.07
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
AATTCTGCTTAAAGGACAAAGTATCTCCTATAACACCTGGAAGGGGGGATACTAGATGCTCAAAAAATAATGTGACTTGTGTTTGACAGACACAAAATAGATGTACAAGAAAATGAAAGTGCCTTTAAAGAGGGATCTGTGTATATGTACACATCGTTACTTTCCTACAATTAGTTGTAGATATGTTGTGACTTGGTCTTTTTCTTGCCCTCTTCAAAGCCTGGAGTTTGTTGCAATGCGCGTTATAGTTCTCAGAAACACTGGCCGCCTGACAAGCTATCTGTTTGGCTAGTCTGAAGGCTGAGGTTGCTGCAGCAAAAAGTGGGTTACACGACAGTACAGCTCTGCTGCTGGAGATGGAGGACCAATAGCCTCTGACAAAGCTGCACAAGGCGGAATGGAGCAGTCAAGGTCTTTGTGAAGGTTCCTCTGGCCACTCCCGAACCCAGTGGGAACCTGAAG
Seq A exon
CAAGTACAGGAGGAGAAGGAAGCGGAGGCAAGTGCCCCCGGGGTCCAGGAAGAGAGCAGCAGCAACCGTGCAGCCTGGGAGCGGCTCCGAGATGGGCGTGGAGTTGAGCCTGAGGAGTTTGACAGGACCAGTCGATTCACGCCCCCTGCCTTCATCCGCCCCACCCGGAAGCTGGACGATGACAAACCTCCAGATATCTGCTTGGAACCCCGGGAGTCT
Seq C2 exon
GTTGTCAACGACGAGATGTGTGATATCTGTGAAGTCTGGACCGCTGAAAGCCTCTTCCCGTGCAGAGTCTGCACCAGGGTTTTCCACGATGGCTGCCTGCGCCGCATGGGCTACCTCCAAGGGGACAGTGCCGTGGAGGTGACCGAGATGGCCCACACCGAGACAGGCTGGAGCTGCTACTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000129_MULTIEX1-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.753 C2=0.016
Domain overlap (PFAM):
C1:
NA
A:
PF0013017=C1_1=PU(4.3=2.7)
C2:
PF0013017=C1_1=PD(91.3=67.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGTTTGTTGCAATGCG
R:
TTTCAGCGGTCCAGACTTCAC
Band lengths:
292-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]