DreEX0068189 @ danRer10
Exon Skipping
Gene
ENSDARG00000077596 | si:ch211-269m17.1
Description
si:ch211-269m17.1 [Source:ZFIN;Acc:ZDB-GENE-091204-154]
Coordinates
chr10:17893609-17933578:+
Coord C1 exon
chr10:17893609-17893920
Coord A exon
chr10:17919358-17919767
Coord C2 exon
chr10:17933393-17933578
Length
410 bp
Sequences
Splice sites
3' ss Seq
GTTGATTTGCTGTATTACAGTCA
3' ss Score
4.77
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CAACTTTTACCCGGGCTGTGTTTATTTCCACGGGCTACTTGGTTTCCGGAGCGAAGTTACACTCCAGAATTCAGCACTGGCGCTGTCCAGCCTCCGCGCCCCACAAACAGCGCTGTTTCCTCGGCTGCGGAATATTTGTTTGACCGGTTTACACCATAGGTTTACACTCACACTCACACTGACCGACGCGGTTACACACGCGCAACCTTCACTGACGAAAGCAAGCCTTGAAATGACTGCTGGCAGCGTTTGAGAGGAGCAGAAGAAAGAAATCCAGTCCCAAGTAGCGGAGCGCCGTCCCATTTCCTTCAG
Seq A exon
TCATGGGTGTGCTGATGTCCAAGAAGCAGCAGGTGGAGAAGGTGCAGAAATGCAGTGTGGTGGTGTCAGCATTTAAAGACGGTCTGAAGGATCGAGCGGCTCCAGCTGCTGCGGATCAGACTGATGATGTGATCACTGAAAACGGGGATGGATCCGCTGAAGGAGCCCAGCACACTGATAAAGAGCACCCTGAACTAAAAGACAAGGACAGCAGACCAAATCAGCAGGCTCCTCCCACAGAGGAGCAAAGGGCCAATCAGGAGGCTTGGGGCCGTCTCCGTGATGGAAAGGGGGTGGAGCCTGAGGACTTAAAGAAGGCACATCAGCTCATTCCTCCAGCGTTTGTGCGGCCAAAGAGAGACGTCAATGATGACCAGCCGGTGGATGTGATGCTCGGACAGAGAGAGCAG
Seq C2 exon
CCTGTGAACGATGAGATGTGTGAGGTGTGTGAAGTTTGGACGGCTGACGATCTGTTCCCCTGCCGGACGTGTACGCGGGTCTTTCATGACGGCTGTCTGCGGGAGATGGGCTACCTGAGCACTGAAGCCCTGCAGGAGATGAGAGAAACAGCCCACACCACCACCGGCTGGAGCTGCTACTACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077596_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.882 C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
PF0013017=C1_1=PU(2.3=0.7)
C2:
PF0013017=C1_1=PD(93.0=64.5),PF144461=Prok-RING_1=WD(100=80.6),PF0062824=PHD=PU(93.3=90.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGGGCTGTGTTTATTTCC
R:
ATCGTCAGCCGTCCAAACTTC
Band lengths:
355-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]