MmuINT0105098 @ mm10
Intron Retention
Gene
ENSMUSG00000036062 | Phf24
Description
PHD finger protein 24 [Source:MGI Symbol;Acc:MGI:2140712]
Coordinates
chr4:42933616-42933997:+
Coord C1 exon
chr4:42933616-42933667
Coord A exon
chr4:42933668-42933778
Coord C2 exon
chr4:42933779-42933997
Length
111 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGTGGAGGGCTCTGTTCAGGAA
3' ss Score
1.17
Exon sequences
Seq C1 exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACAGTAGAGCAGGTGCAGAAG
Seq A exon
GTGAGCCTGGCTGTGTCAGCCTTCAAGGATGGGCTACGGGACAGGCCTTCCATTAGACGTGGGGGTGAGCTGCCAGGGTCCCGCCGTGGCACTGTGGAGGGCTCTGTTCAG
Seq C2 exon
GAAGTACAGGAGGAGAAGGAAGCAGAGGCGAGCGCCCCCGTGGTCCAGGAAGAGAGCAGTATCAACCGCGCAGCCTGGGAGCGGCTCCGAGATGGGCGTGGCGTCGAGCCTGAGGAGTTTGACAGGACCAGCCGATTCACGCCTCCTGCCTTCATCCGGCCCACGCGGAAGCTGGACGATGACAAACCTCCAGATATCTGCTTGGAACCCCGGGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036062:ENSMUST00000107976:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.764 A=NA C2=0.601
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCAAGCGGCAGACAGTA
R:
CCGGGGTTCCAAGCAGATATC
Band lengths:
249-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types