RnoINT0110440 @ rn6
Intron Retention
Gene
ENSRNOG00000000129 | Phf24
Description
PHD finger protein 24 [Source:RGD Symbol;Acc:1559864]
Coordinates
chr5:58377033-58377414:+
Coord C1 exon
chr5:58377033-58377084
Coord A exon
chr5:58377085-58377195
Coord C2 exon
chr5:58377196-58377414
Length
111 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGTGGAGGGCTCTGTTCAGCAA
3' ss Score
-1.07
Exon sequences
Seq C1 exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACAGTAGAGCAGGTGCAGAAG
Seq A exon
GTGAGCCTGGCTGTGTCAGCCTTCAAGGATGGGCTACGGGACAGGCCTTCCGTTAGACGTGGGGGTGAGCTACCAGGGTCCCGCCGTGGCACTGTGGAGGGCTCTGTTCAG
Seq C2 exon
CAAGTACAGGAGGAGAAGGAAGCGGAGGCAAGTGCCCCCGGGGTCCAGGAAGAGAGCAGCAGCAACCGTGCAGCCTGGGAGCGGCTCCGAGATGGGCGTGGAGTTGAGCCTGAGGAGTTTGACAGGACCAGTCGATTCACGCCCCCTGCCTTCATCCGCCCCACCCGGAAGCTGGACGATGACAAACCTCCAGATATCTGCTTGGAACCCCGGGAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000129:ENSRNOT00000000141:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=0.753
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(4.3=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCAAGCGGCAGACAGTA
R:
CCGGGGTTCCAAGCAGATATC
Band lengths:
249-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]