MmuEX0030678 @ mm9
Exon Skipping
Gene
ENSMUSG00000036062 | N28178
Description
expressed sequence N28178 [Source:MGI Symbol;Acc:MGI:2140712]
Coordinates
chr4:42935439-42946869:+
Coord C1 exon
chr4:42935439-42935565
Coord A exon
chr4:42946488-42946539
Coord C2 exon
chr4:42946651-42946869
Length
52 bp
Sequences
Splice sites
3' ss Seq
AAAACTGATTTTGTCCACAGAGC
3' ss Score
8.46
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTACTGCCAGGAGAACGGCGACTAGAAACAGACTCCCAGGACACTGGATGGAGAAACTGGATTCCTAAAGCAACAGGCAGAGGAGAACAGCTGGACCACTTGGGTTGCCTCAAAGACCTGCCGAGG
Seq A exon
AGCCATGGGGGTGTTGATGTCCAAGCGGCAGACAGTAGAGCAGGTGCAGAAG
Seq C2 exon
GAAGTACAGGAGGAGAAGGAAGCAGAGGCGAGCGCCCCCGTGGTCCAGGAAGAGAGCAGTATCAACCGCGCAGCCTGGGAGCGGCTCCGAGATGGGCGTGGCGTCGAGCCTGAGGAGTTTGACAGGACCAGCCGATTCACGCCTCCTGCCTTCATCCGGCCCACGCGGAAGCTGGACGATGACAAACCTCCAGATATCTGCTTGGAACCCCGGGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036062_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.703 C2=0.591
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGACTAGAAACAGACTCC
R:
CCTCTGCTTCCTTCTCCTCCT
Band lengths:
139-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: