RnoEX0065619 @ rn6
Exon Skipping
Gene
ENSRNOG00000016794 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:RGD Symbol;Acc:1310377]
Coordinates
chr3:8841881-8844081:+
Coord C1 exon
chr3:8841881-8841902
Coord A exon
chr3:8843405-8843446
Coord C2 exon
chr3:8843953-8844081
Length
42 bp
Sequences
Splice sites
3' ss Seq
TCCCTGGGTTCGGTCCTCAGCTC
3' ss Score
7.36
5' ss Seq
AAAGCGGCT
5' ss Score
-12.52
Exon sequences
Seq C1 exon
CAACCTCACTTTGGCGGCGAAG
Seq A exon
CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Seq C2 exon
TCTCCCCTCACCAGGACGCTACCTTCCTGTACACGGAGCCTCTAGGCCGAGTGCTGGGCCTGTGGATTGCAACGGAGGATGCCATGCTGGAGAACGGTTGCCTCTGGTTCATCCCTGGCTCCCACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016794-'21-15,'21-14,22-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.933 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(2.7=100),PF063756=BLVR=FE(11.1=100)
A:
PF057218=PhyH=FE(5.3=100),PF063756=BLVR=FE(22.2=100)
C2:
PF057218=PhyH=FE(16.4=100),PF063756=BLVR=PD(14.3=20.5)
Main Inclusion Isoform:
ENSRNOT00000022552fB10659
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACTTTGGCGGCGAAG
R:
CAGGGATGAACCAGAGGCAAC
Band lengths:
136-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]