RnoEX0065620 @ rn6
Exon Skipping
Gene
ENSRNOG00000016794 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:RGD Symbol;Acc:1310377]
Coordinates
chr3:8841881-8844293:+
Coord C1 exon
chr3:8841881-8841902
Coord A exon
chr3:8843953-8844081
Coord C2 exon
chr3:8844177-8844293
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTGGGTGGGTCTCCTACAGTCT
3' ss Score
5.27
5' ss Seq
CCAGTGAGG
5' ss Score
4.09
Exon sequences
Seq C1 exon
CAACCTCACTTTGGCGGCGAAG
Seq A exon
TCTCCCCTCACCAGGACGCTACCTTCCTGTACACGGAGCCTCTAGGCCGAGTGCTGGGCCTGTGGATTGCAACGGAGGATGCCATGCTGGAGAACGGTTGCCTCTGGTTCATCCCTGGCTCCCACACCA
Seq C2 exon
GTGGGGTGTCAAGAAGGATGATCCGAGCCCCTTCGGACTCTGGGCCTGGCACCAGCTTCCTCGGGTCGGAGCCAGCCTGGGATAACAACCTCTTTGTGCCTTTGCCAGTGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016794-'21-18,'21-15,24-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(2.7=100),PF063756=BLVR=FE(11.1=100)
A:
PF057218=PhyH=FE(16.4=100),PF063756=BLVR=PD(14.3=20.5)
C2:
PF057218=PhyH=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCACTTTGGCGGCGAA
R:
CTCTCCTCACTGGCAAAGGC
Band lengths:
138-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]