GgaEX1043553 @ galGal3
Exon Skipping
Gene
ENSGALG00000004565 | PHYHD1
Description
NA
Coordinates
chr17:5952218-5953443:+
Coord C1 exon
chr17:5952218-5952239
Coord A exon
chr17:5952519-5952647
Coord C2 exon
chr17:5953327-5953443
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCACTGCTGTTCATCACAGTGA
3' ss Score
6.36
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CAACCCGGCATCGGCGGGGAAG
Seq A exon
TGACACCACACCAGGACGCCACGTTCCTGCACACGGAGCCCCTGGGCCGGGTCCTGGGCTTCTGGATTGCACTGGAGGACGCCACGCAGGAGAACGGCTGCCTGTGGTTCATTCCCGGCTCCCACACCA
Seq C2 exon
GTGGGATCACCCGCAGAATGGTGCGTGCAGCCCAGGGTGCCTCGACGTGCGTGGAGTTTGTAGGGTCAGAGCCAGCCTACGATGACAGCAAGTTCATACCTGTGCCCATAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004565-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.025
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(2.8=100)
A:
PF057218=PhyH=FE(17.3=100)
C2:
PF057218=PhyH=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]