DreEX6082852 @ danRer10
Exon Skipping
Gene
ENSDARG00000029905 | phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-159]
Coordinates
chr21:4351673-4354011:+
Coord C1 exon
chr21:4351673-4351694
Coord A exon
chr21:4353529-4353657
Coord C2 exon
chr21:4353895-4354011
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTCTGAACCTTGTCTCTAGTGA
3' ss Score
6.22
5' ss Seq
ACGGTCAGA
5' ss Score
5.42
Exon sequences
Seq C1 exon
CAACCCGGGATTGGTGGAGAAG
Seq A exon
TGACTCCTCACCAGGACGCCACTTTCCTGTACACACAGCCTCTGGGGCGAGTCATGGGCGTCTGGGTTGCGCTGGAGGACGCCATGCAGGAGAACGGCTGTCTGTGGTTCATCCCAGGATCACACAACG
Seq C2 exon
ATGGTATAACCAGGCGAATGGTGCGGACACCTAAAGGCACATTTCCTCTGACTGATTTCATTGGCCGAGAAAAGGATTATGACGACAAGCTGTTTGTTCCTGCTCCTGTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029905-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(2.8=100)
A:
PF057218=PhyH=FE(17.3=100)
C2:
PF057218=PhyH=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCGGGATTGGTGGAGAAG
R:
ACAGGAGCAGGAACAAACAGC
Band lengths:
130-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]