BtaEX0026930 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038831 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr11:99455283-99457056:+
Coord C1 exon
chr11:99455283-99455304
Coord A exon
chr11:99456482-99456610
Coord C2 exon
chr11:99456940-99457056
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCAGGTGGGCCTGCTGCAGTCG
3' ss Score
0.06
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CAACCTCACTTCGGAGGTGAAG
Seq A exon
TCGCCCCTCACCAGGACGCCTCCTTCCTGTACACGGAGCCCCTGGGCCGGGTGCTGGGCCTGTGGATTGCCCTGGAAGACGCCATGCTGGAGAACGGCTGCCTCTGGTTCATCCCTGGGTCCCACACAG
Seq C2 exon
GTGGAGTGTCAAGAAGGATGGTCCGGACCCCTGCTGGCTCAGTGCCTGGCACCAGCTTCCTCGGGTCGGAGCCAATCCGGGATAACAGCCTCTTTGTGCCCACACCAGTGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038831-'17-19,'17-17,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(2.8=100)
A:
PF057218=PhyH=FE(17.3=100)
C2:
PF057218=PhyH=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCACTTCGGAGGTGAA
R:
CTCTCAGCACTGGTGTGGG
Band lengths:
139-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development