RnoEX0066478 @ rn6
Exon Skipping
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45314176-45326926:+
Coord C1 exon
chr3:45314176-45314333
Coord A exon
chr3:45326403-45326535
Coord C2 exon
chr3:45326814-45326926
Length
133 bp
Sequences
Splice sites
3' ss Seq
AAGTTTGAATATTTCCTCAGTGC
3' ss Score
3.29
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
ATACTTGCCAATCTCCTACCATGTATCTGTGTGTATGGAACCTGGCAATGAAGTGGCCTGTATTCTCTGTGTACTCCTAGTCTTTTTCCTACTGTGTAGTTGAGCCTGTGTCATTAGGAAGCTCCTGTGTATACCCGGCATCCGCGCCTTATTTCTCA
Seq A exon
TGCAGTGACCTGCATCAGACATGGTGCCATGATTCCATCATGTCCTGGCATGCCGTCCAGGAGATAGAAAAATCAGCCATTGAGGAAGGAGGCAGAGCTCAGGATGGTTGGTTCTCACATAAACATCTGCAAG
Seq C2 exon
GAGCTTCAGTTTCAACGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCGCCCAGCATCGCCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504-'12-8,'12-7,13-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.600 C2=0.623
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000059246fB10805
Main Skipping Isoform:
ENSRNOT00000059246fB10807
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCCAATCTCCTACCATGT
R:
GCGATTCTGCTCCAAGCCTAC
Band lengths:
250-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]