RnoEX0066488 @ rn6
Exon Skipping
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45277348-45349323:+
Coord C1 exon
chr3:45277348-45277483
Coord A exon
chr3:45326814-45326926
Coord C2 exon
chr3:45349289-45349323
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCCTTGACTCACAGGAG
3' ss Score
7.53
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGGAATGCCCGCCCCTGAACAGGCCTCACTGGTGGAGGAGGGGCAACCACAGACCCACCAGGAAGCTGTCTCCACTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAGCTTCCGTGAAGGAGCAG
Seq A exon
GAGCTTCAGTTTCAACGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCGCCCAGCATCGCCAGCACCAG
Seq C2 exon
CTCAACTGAAAAGTCATTTCCTTGGAGATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504_MULTIEX1-2/6=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=0.623 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000059246fB10808
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGCCCGCCCCTGAA
R:
CTGTTGATCTCCAAGGAAATGACT
Band lengths:
170-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]