GgaEX0018986 @ galGal4
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
plakophilin-4 [Source:RefSeq peptide;Acc:NP_001006529]
Coordinates
chr7:35886563-35905573:+
Coord C1 exon
chr7:35886563-35886701
Coord A exon
chr7:35896734-35896846
Coord C2 exon
chr7:35905539-35905573
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTGAAATTTCAGGAA
3' ss Score
8.79
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
TGCAGGCGAAATGCCAGCCCCTGAGCAGACCCCAGTGGTGGAAGAGGGGCTGCTGCAGGCAACGCAGGAGACTTCCACCAGCCCGGGAATGGAACCCGAGACTACTGCCACTACCATTTTAGCCTCTGTAAAGGAGCAG
Seq A exon
GAACTCCAATTTCAAAGACTTACCAGAGAACTGGAAGTGGAAAGGCAAATTGTGGCTAATCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGTATCGCCAGCACAAG
Seq C2 exon
TTCTACTGAGAAGTCATTTCCTTGGAGATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561_MULTIEX1-1/5=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=0.816 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000020513fB10635
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAATGCCAGCCCCTGAG
R:
TGGTGATCTCCAAGGAAATGACT
Band lengths:
167-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]