GgaEX0018987 @ galGal4
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
plakophilin-4 [Source:RefSeq peptide;Acc:NP_001006529]
Coordinates
chr7:35896734-35910118:+
Coord C1 exon
chr7:35896734-35896846
Coord A exon
chr7:35905539-35905573
Coord C2 exon
chr7:35909993-35910118
Length
35 bp
Sequences
Splice sites
3' ss Seq
GACTTTTTTTCTTTCCGCAGTTC
3' ss Score
10.51
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GAACTCCAATTTCAAAGACTTACCAGAGAACTGGAAGTGGAAAGGCAAATTGTGGCTAATCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGTATCGCCAGCACAAG
Seq A exon
TTCTACTGAGAAGTCATTTCCTTGGAGATCACCAG
Seq C2 exon
ATCCAGCAGCCACCAGTGCAAACAAACCCCTCGTGTCAGAGGGAGTTCATACCAATGCCTATCACATTAGGACAGAACCAGTACAAGGGAACCTCTACTCACCGGAACAGACATCTCTCCATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561_MULTIEX1-2/5=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGTATCGCCAGCACAAG
R:
CCGGTGAGTAGAGGTTCCCTT
Band lengths:
126-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]