GgaEX0018987 @ galGal3
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
NA
Coordinates
chr7:38031979-38045369:+
Coord C1 exon
chr7:38031979-38032091
Coord A exon
chr7:38040784-38040818
Coord C2 exon
chr7:38045238-38045369
Length
35 bp
Sequences
Splice sites
3' ss Seq
GACTTTTTTTCTTTCCGCAGTTC
3' ss Score
10.51
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GAACTCCAATTTCAAAGACTTACCAGAGAACTGGAAGTGGAAAGGCAAATTGTGGCTAATCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGTATCGCCAGCACAAG
Seq A exon
TTCTACTGAGAAGTCATTTCCTTGGAGATCACCAG
Seq C2 exon
ATCCAGCAGCCACCAGTGCAAACAAACCCCTCGTGTCAGAGGGAGTTCATACCAATGCCTATCACATTAGGACAGAACCAGTACAAGGGAACCTCTACTCACCGGAACAGACATCTCTCCATGAAAGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.614 A=0.877 C2=1.000
Domain overlap (PFAM):
C1:
PF108283=DUF2570=PD(50.8=78.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGTATCGCCAGCACAAG
R:
CCGGTGAGTAGAGGTTCCCTT
Band lengths:
126-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]