RnoEX0066479 @ rn6
Exon Skipping
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45326814-45365709:+
Coord C1 exon
chr3:45326814-45326926
Coord A exon
chr3:45349289-45349323
Coord C2 exon
chr3:45365578-45365709
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCTTTTTCTCTAGCTC
3' ss Score
10.64
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGCTTCAGTTTCAACGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCGCCCAGCATCGCCAGCACCAG
Seq A exon
CTCAACTGAAAAGTCATTTCCTTGGAGATCAACAG
Seq C2 exon
ATGTGCCAAATACTGGTGTAAGCAAACCTAGAGTTTCTGACACTGTTCATCCCAACAACTATCTCATCAGGACGGAGCCAGAGCAAGGGGCCCTCTACTCACCAGAGCAGACGTCTCTCCATGAAAGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504-'14-20,'14-12,21-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=1.000 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAGCAGAATCGCCCAG
R:
CTGGCTCCGTCCTGATGAGAT
Band lengths:
116-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]