MmuEX0035466 @ mm10
Exon Skipping
Gene
ENSMUSG00000026991 | Pkp4
Description
plakophilin 4 [Source:MGI Symbol;Acc:MGI:109281]
Coordinates
chr2:59266388-59305197:+
Coord C1 exon
chr2:59266388-59266500
Coord A exon
chr2:59289218-59289252
Coord C2 exon
chr2:59305066-59305197
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTTTTTTCTCTAGCTC
3' ss Score
10.63
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GAGCTTCAGTTTCAACGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCGCCAAGCATCGCCAGCACCAG
Seq A exon
CTCAACTGAAAAGTCATTTCCTTGGAGATCAACAG
Seq C2 exon
ATGTGCCAAATCCTGGTGTGAGCAAACCTAGAGTTTCTGACACTATTCATCCCAACAACTATCTCATCAGGACAGAGCCAGAACAGGGGACCCTCTACTCACCAGAACAGACTTCTCTCCATGAAAGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026991-'14-23,'14-18,17-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGAGAACTGGAAGTGGAA
R:
TCTAGGTTTGCTCACACCAGGA
Band lengths:
124-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types