DreEX0055927 @ danRer10
Exon Skipping
Gene
ENSDARG00000045331 | pkp4
Description
plakophilin 4 [Source:ZFIN;Acc:ZDB-GENE-120411-14]
Coordinates
chr6:12019428-12035128:-
Coord C1 exon
chr6:12035016-12035128
Coord A exon
chr6:12021650-12021684
Coord C2 exon
chr6:12019428-12019544
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTTCTTTTTTTCAGCTC
3' ss Score
11.11
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GAGCTCCAATTTGAACGGCTTACCAGAGAACTCGAGGAGGAGAGACAGATTGTAGCCAATCAGTTGGAGCGATGCAGGTTGGGGGCGGAGTCTCCAGGTGCTGCAAGTGACAG
Seq A exon
CTCTTCTGAGAAGTCTCTTCTGTGGAGATCTGCAG
Seq C2 exon
AATCCTCAGGTGCAGGTGTGTCTAAGCCGTCGGATGGTTGCCCCTCACCGACATTTGGAGTCAGAGGTCAAGGGTCACTTTACTCTCCTGAACTGGAACAGATCTCCCTACGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045331_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCTTACCAGAGAACTCGA
R:
GCTTAGACACACCTGCACCTG
Band lengths:
126-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]