HsaEX0047800 @ hg38
Exon Skipping
Gene
ENSG00000144283 | PKP4
Description
plakophilin 4 [Source:HGNC Symbol;Acc:HGNC:9026]
Coordinates
chr2:158577271-158621121:+
Coord C1 exon
chr2:158577271-158577383
Coord A exon
chr2:158603070-158603104
Coord C2 exon
chr2:158620990-158621121
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCTTTTTCTTTAGCTC
3' ss Score
11.26
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGCTTCAGTTTCAGCGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGCATCGCCAGCACCAG
Seq A exon
CTCAACTGAGAAGTCATTTCCTTGGAGATCAACAG
Seq C2 exon
ACGTGCCAAATACTGGTGTAAGCAAACCTAGAGTTTCTGACGCTGTCCAGCCCAACAACTATCTCATCAGGACAGAGCCAGAACAAGGAACCCTCTATTCACCAGAACAGACATCTCTCCATGAAAGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144283-'30-27,'30-22,38-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF117563=YgbA_NO=FE(54.4=100)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCACCAAGCATCGCCAG
R:
AGGGTTCCTTGTTCTGGCTCT
Band lengths:
121-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development