GgaEX0018986 @ galGal3
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
NA
Coordinates
chr7:38021813-38040818:+
Coord C1 exon
chr7:38021813-38021946
Coord A exon
chr7:38031979-38032091
Coord C2 exon
chr7:38040784-38040818
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTGAAATTTCAGGAA
3' ss Score
8.79
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GCGAAATGCCAGCCCCTGAGCAGACCCCAGTGGTGGAAGAGGGGCTGCTGCAGGCAACGCAGGAGACTTCCACCAGCCCGGGAATGGAACCCGAGACTACTGCCACTACCATTTTAGCCTCTGTAAAGGAGCAG
Seq A exon
GAACTCCAATTTCAAAGACTTACCAGAGAACTGGAAGTGGAAAGGCAAATTGTGGCTAATCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGTATCGCCAGCACAAG
Seq C2 exon
TTCTACTGAGAAGTCATTTCCTTGGAGATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.614 C2=0.877
Domain overlap (PFAM):
C1:
PF108283=DUF2570=PU(45.8=62.8)
A:
PF108283=DUF2570=PD(50.8=78.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAATGCCAGCCCCTGAG
R:
TGGTGATCTCCAAGGAAATGACT
Band lengths:
167-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]