HsaEX0047805 @ hg38
Exon Skipping
Gene
ENSG00000144283 | PKP4
Description
plakophilin 4 [Source:HGNC Symbol;Acc:HGNC:9026]
Coordinates
chr2:158533180-158603104:+
Coord C1 exon
chr2:158533180-158533316
Coord A exon
chr2:158577271-158577383
Coord C2 exon
chr2:158603070-158603104
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTCTTGAATCACAGGAG
3' ss Score
6.22
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGGAATGCCAGCTCCTGAGCAGGCCTCATTGGTGGAGGAGGGGCAACCACAGACCCGCCAGGAAGCTGCCTCCACTGGCCCAGGCATGGAACCCGAGACCACAGCCACCACTATTCTAGCATCCGTGAAGGAGCAG
Seq A exon
GAGCTTCAGTTTCAGCGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTAGGCTTGGAGCAGAATCACCAAGCATCGCCAGCACCAG
Seq C2 exon
CTCAACTGAGAAGTCATTTCCTTGGAGATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144283-'19-22,'19-16,30-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=0.656 C2=1.000
Domain overlap (PFAM):
C1:
PF117563=YgbA_NO=PU(23.5=36.4)
A:
PF117563=YgbA_NO=FE(54.4=100)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAATGCCAGCTCCTGAG
R:
TGTTGATCTCCAAGGAAATGACT
Band lengths:
171-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development