DreEX0024897 @ danRer10
Exon Skipping
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30649115-30684979:-
Coord C1 exon
chr2:30684846-30684979
Coord A exon
chr2:30672022-30672134
Coord C2 exon
chr2:30649115-30649149
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGACTGCTCTATGTGTGCAGGAG
3' ss Score
7.96
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAGTAATGCCAGTACCAGACCAGCCCTCTGGCACAGAGAACTCCAGCATGTTGAGCCCGGTACTGAACGCCTCCAATGGAGACGGATCTGAAACAGAGACCACCTCTGCCATCTTGGCCTCTGTGAAAGAACAG
Seq A exon
GAGCTGCAGTTTGAGCGACTGACGAGAGAGTTGGAGGCTGAGAGGCAGATTGTTGCCACCCAGCTGGAGAGATGCAAGCTGGGATCTGAGACCGGAAGCATGAGCAGCATCAG
Seq C2 exon
TTCTGCAGATGAGAAGTTTCGCTGGAACAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779-'2-7,'2-6,5-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=0.230 C2=0.981
Domain overlap (PFAM):
C1:
PF034419=FAD_binding_7=PU(32.5=93.0)
A:
PF034419=FAD_binding_7=FE(30.1=100)
C2:
PF034419=FAD_binding_7=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGCCAGTACCAGACCAGC
R:
TGGTTGTTCCAGCGAAACTTCT
Band lengths:
165-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]